Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e19
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.39 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.90 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   3.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.4  

>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 344 ETPKKCKDIIKVAKSLLTELKFASFGEN 427
           +  K+CKD+    ++LL E +   FG++
Sbjct: 174 DVSKRCKDLASFMENLLQETRTPGFGKD 201


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 344 ETPKKCKDIIKVAKSLLTELKFASFGEN 427
           +  K+CKD+     +LL E +   FG++
Sbjct: 468 DVSKRCKDLASFMGNLLQETRTPGFGKD 495


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 41  DNISVIL--NKTSASKMPYWYYDKKDLLNTPSFRDGINND 154
           D +S+ L  NK       YW     D++N P++ +    D
Sbjct: 177 DQVSLALYNNKNFVDLSDYWKSGTWDIINVPAYLNTYKGD 216


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 47  ISVILNKTSASKMPYWYYDKKDLLNTPSFRDGINNDAENRY 169
           IS + NKT  +   Y Y    +  N  ++ +  NN+ +  Y
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLY 355


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 254 NKQPLWQQYY 225
           N+QP+W  YY
Sbjct: 432 NRQPVWFYYY 441


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 371  IKVAKSLLTELKFASFGENPKEEVMTL 451
            I+ AKS + +++    GE+  E V+TL
Sbjct: 1185 IESAKSYVVDVRVHVPGESESETVLTL 1211


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 254 NKQPLWQQYY 225
           N+QP+W  YY
Sbjct: 432 NRQPVWFYYY 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,577
Number of Sequences: 438
Number of extensions: 3062
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)