Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e12
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           80   7e-16
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    34   0.061
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    30   0.99 
09_03_0040 + 11816056-11819069,11819837-11820428                       28   3.0  
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653...    27   7.0  
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462...    27   9.2  
02_02_0400 + 9836045-9837115,9837474-9838577                           27   9.2  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 80.2 bits (189), Expect = 7e-16
 Identities = 37/57 (64%), Positives = 42/57 (73%)
 Frame = +3

Query: 225 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPN 395
           GKVHGSLARAGKV+GQTPKV          GRA +R+QYNRRFV  V  FG++RGPN
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPN 58


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 33.9 bits (74), Expect = 0.061
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 32  RAIDTRPGRQWPGVHWSDQGTHSYSCCSW**RPYSIIMWS 151
           +A+  RP    PG+HW++Q    YS CS    P  I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406


>02_02_0664 -
           12747888-12747900,12748161-12748229,12748332-12748395,
           12749540-12749558,12749777-12749843,12749934-12749953,
           12750079-12750248,12751646-12751823
          Length = 199

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 56  RQWPGVHWSDQGTHSY 103
           R WPG+HWSD  T  Y
Sbjct: 51  RIWPGLHWSDSSTPLY 66


>09_03_0040 + 11816056-11819069,11819837-11820428
          Length = 1201

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 370 PSDVVADPTPIHRFISK*NAKVTSKKK 450
           P+D +A P+P H F+ + N K + ++K
Sbjct: 404 PNDSIAKPSPSHGFVERVNGKGSQQEK 430


>02_04_0640 -
           24664841-24664855,24664895-24664978,24665232-24665319,
           24665457-24667318
          Length = 682

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = -2

Query: 125 FITNCSKSTNAFLDLTNGLLAIDVQDV-----CRLPSDMQLHIVKS 3
           FI + S   +AF     GLL++ VQD+     C  PS +QLH +KS
Sbjct: 346 FIEDESVIQDAFAQCIGGLLSVVVQDMRLTVECVHPS-VQLHTIKS 390


>08_01_0533 +
           4625376-4625709,4625799-4625966,4627428-4627689,
           4627787-4627934,4628453-4628496,4628812-4628859,
           4629245-4630509,4630741-4630839,4630916-4631097,
           4631186-4631246,4631488-4631725,4631818-4631971,
           4632042-4632335
          Length = 1098

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 25  ISEGNRHTSWTSMARS 72
           +S+GN H  WT+MA+S
Sbjct: 421 LSDGNGHVLWTTMAKS 436


>02_02_0400 + 9836045-9837115,9837474-9838577
          Length = 724

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 337 STTEDLSTLCRPSDVVAD 390
           S  E L+TLC P DVV D
Sbjct: 445 SAAEHLTTLCTPDDVVLD 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,725,855
Number of Sequences: 37544
Number of extensions: 176572
Number of successful extensions: 444
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)