Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e12
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)           96   1e-20
SB_46227| Best HMM Match : DUF1303 (HMM E-Value=6.4)                   27   5.4  
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       27   5.4  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 45/56 (80%), Positives = 47/56 (83%)
 Frame = +3

Query: 228 KVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPN 395
           KVHGSLARAGKVK QTPKV+        TGRAKRR+QYNRRFVNVVQTFGRRRGPN
Sbjct: 2   KVHGSLARAGKVKSQTPKVDAQEKKKKKTGRAKRRMQYNRRFVNVVQTFGRRRGPN 57


>SB_46227| Best HMM Match : DUF1303 (HMM E-Value=6.4)
          Length = 610

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 258 YLHEPKIRALYHQAMAL*GLVQMMRAQRQDMNHLKELHIMI 136
           YLH PK     H+ M     + M+  + +D +HLKE  +MI
Sbjct: 336 YLHHPK----EHEVMI--PYIAMVSEENEDFHHLKEHEVMI 370


>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 272 NPQSGKTTKKEEEDWP 319
           NP  GKT  +E++DWP
Sbjct: 384 NPPQGKTPIEEDDDWP 399


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 157 KGAPHNDRVRSSSPTAARVRMRS 89
           +G+PH  R R+SSP  AR R  S
Sbjct: 729 RGSPHQPRGRASSPGGARGRAAS 751


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,475,191
Number of Sequences: 59808
Number of extensions: 201530
Number of successful extensions: 520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)