Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e11
         (770 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.51 
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    24   1.2  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    24   1.2  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   3.6  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    22   4.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.2  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   8.2  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -2

Query: 721 TCVCNVWRITCRRNCAPKRCCSSLCWENSKICRPA 617
           TC C   + TC R C    C      + S   RPA
Sbjct: 875 TCKCENGKPTCWRECDKATCEKLFRMKKSSALRPA 909



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 721 TCVCNVWRITCRRNCAPKRCCSS 653
           TC      I C+R    K+CC +
Sbjct: 778 TCDAKYLEIKCKRIYNEKQCCKN 800



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 103 VTKQVRPYNSIDEKHHYNTVRNVLILIKNARLVL 2
           + + + P N +DE+   +T     +L + + LVL
Sbjct: 117 IIQDIVPQNVLDEEEKSSTKHYAALLTERSSLVL 150


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 739 HVAVQKTCVCNVWRITC 689
           H+     C+C++W I C
Sbjct: 213 HILAMLNCLCSLWFINC 229


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 739 HVAVQKTCVCNVWRITC 689
           H+     C+C++W I C
Sbjct: 213 HILAMLNCLCSLWFINC 229


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 215 PQKRFIFGMIVFVLSNAFGRFIRNNRHFTNTFRHN 319
           P+KR     I   +   F  +  N + + N+ RHN
Sbjct: 100 PEKRLTLNGIYEYIMRNFPYYRENKQGWQNSIRHN 134


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 163 RIAFLNIDNNQFLPSCKTPKKI 228
           R  F  ++N+QFL + K  KK+
Sbjct: 126 RAKFEELNNDQFLKTLKPVKKV 147


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 101 HHVGHSVHG*NKIV 142
           HH GH +H  + +V
Sbjct: 324 HHAGHHIHAQHHVV 337


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 215 PQKRFIFGMIVFVLSNAFGRFIRNNRHFTNTFRHN 319
           PQK      I   + + F  + +N + + N+ RH+
Sbjct: 157 PQKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHS 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,927
Number of Sequences: 336
Number of extensions: 4413
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)