Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5e11
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 29 0.97
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 29 0.97
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.3
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 27 3.9
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 26 6.9
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 9.1
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 9.1
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 9.1
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 9.1
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.97
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Frame = -2
Query: 364 NLELRPSS*SDYCTLIMSKRVREMSVVSDETAKRIRQNEHYHAKNESFLGFCNLEEIDYY 185
NL L +S + +SK + ++ ++ ++ + + +S L NL+EI +
Sbjct: 14 NLGLSVTSRRNQILFYLSKALNLAHLLRSDSLQKSFLDALKQSATDSELLHKNLDEIKFL 73
Query: 184 QCLKM--QYVLDQ--NFDNDFILTVYRMANVVTKQVRPYNSIDEK 62
Q K+ + +L+Q N ND+ L V R+ + ++ V+ NS++ +
Sbjct: 74 QNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQ 118
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 28.7 bits (61), Expect = 0.97
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 185 IIINFFQVAKPQKRFIFGMIVFVLSNAFGRFIRNNRHFTNTFRHN 319
++I + P +R I +SN F + ++N + N+ RHN
Sbjct: 135 MLIGMSIIRSPDRRLTLSAIYDWISNTFSFYNKSNNGWQNSIRHN 179
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = -2
Query: 280 DETAKRIRQNEHYHAKNESFLGFCNLEEIDYYQCLKMQYVLDQNFD 143
D + + QN Y+ + E+ N+E++DYY+ L+ ++D+N D
Sbjct: 28 DSQSDPLNQNL-YNIETENVKDL-NIEDVDYYEKLQNFKIVDENID 71
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 643 PNIMMNNNVLVHNFYDKLYAKHCKRMFFV 729
P + N+L F+D L+ +HC +F V
Sbjct: 273 PTVQQFMNLLKKAFFDHLFGRHCLLLFQV 301
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 160 ERIAFLN-IDNNQFLPSCKTPKKIHFWHDSVRFVECVWPFHPKQPTFHEHV*T*LVCNNR 336
E ++ LN + N + + + K + D+ +V+C + + E LVC+ +
Sbjct: 5 ESLSLLNSMQGNVKIGNVEPAKGNEGYVDNAGYVDCTKSYFEATKSLKEEQ---LVCDPK 61
Query: 337 FTMTDVVQDFNELYDKIEN 393
FT+ D + F + K+++
Sbjct: 62 FTLLDSISAFEIMEPKMDS 80
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/76 (18%), Positives = 34/76 (44%)
Frame = +1
Query: 493 LNEQLNCVMHKCVPVIFGTRLDKQFRETDDIDANNNINGTFMLDGRFLSFPNIMMNNNVL 672
L ++ + H+C + + E ID NN + ++ +++ + M+ L
Sbjct: 209 LQKENERMFHECKDDTYTWPSSYRLGEVVWIDINNELIPAIIVARNLINYESNQMDAVKL 268
Query: 673 VHNFYDKLYAKHCKRM 720
+ + + + Y HCK++
Sbjct: 269 ISDTFVEPYQYHCKQL 284
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 707 CLAYNLS*KLCTKTLLF 657
C YN+S K+CTK + F
Sbjct: 1317 CAVYNISTKICTKYIQF 1333
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.4 bits (53), Expect = 9.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 361 DFNELYDKIENKYKLKYTFDC 423
+FNE+++ ++Y LKY+ C
Sbjct: 604 NFNEMHNAYSSRYPLKYSKSC 624
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 361 DFNELYDKIENKYKLKYTFDCATNNNERILFGAIQERKSY 480
D NE++D E L D T +R++ Q KSY
Sbjct: 518 DLNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSY 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,715
Number of Sequences: 5004
Number of extensions: 69310
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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