Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e11
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50311-9|AAA92313.1|  137|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF039052-12|AAF98633.1|  391|Caenorhabditis elegans Hypothetical...    28   8.5  
AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical ...    28   8.5  

>U50311-9|AAA92313.1|  137|Caenorhabditis elegans Hypothetical
           protein C25E10.8 protein.
          Length = 137

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
 Frame = -2

Query: 733 AVQKTCVCNVWRITCRRNC------APKRCCSSLCWENSKICR 623
           A  KTC  N   + C  +C       PK C S+ C EN+  C+
Sbjct: 16  AANKTCGANEEMVACHDHCETQCGYTPKVCLSAQCIENACDCK 58


>Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical
           protein F47H4.7 protein.
          Length = 553

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -2

Query: 364 NLELRPSS*SDYCTLIMSKRVREMSVVSDETAKRIRQNEHYHAKNESFLGFCNLEEI 194
           NLEL P S ++    IM   VRE+   + ++A     +  +H K++ F  +  L+E+
Sbjct: 117 NLELEPRSLAEMHNDIMKNIVREL---NSQSANSPGPSARHHDKDDDFPAYNQLKEL 170


>Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical
           protein C07A9.8 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 160 ERIAFLNIDNNQFLPSCKTPKKIHFWHDSVR 252
           E I++L  + N+ + + K P K+  W  SVR
Sbjct: 407 EEISYLKKEENKMIAAGKKPNKLKLWVKSVR 437


>AF039052-12|AAF98633.1|  391|Caenorhabditis elegans Hypothetical
           protein T22D1.12 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 246 TIMPKMNLFWGFATWKKLIIINV*KCNTF 160
           T+   +NLFW F  W    +  V   NTF
Sbjct: 92  TLYTSLNLFWPFGDWSCKFLAGVQAVNTF 120


>AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical
           protein M03F8.3 protein.
          Length = 744

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 300 VKCRLFRMKRPNAFDKTNTIMPKMNLFWGFATWKKLIIINV 178
           ++C+     R N FD+  TIMP+   FW   ++ + +I N+
Sbjct: 131 MRCKQINHAR-NVFDRAITIMPRAMQFWLKYSYMEEVIENI 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,891,836
Number of Sequences: 27780
Number of extensions: 400484
Number of successful extensions: 1076
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)