Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e09
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    27   2.6  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.4  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    26   5.9  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    26   5.9  

>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 338 PHKYLAHQLSTVSILEQHNTGCPHLCSLSCL*VWFE 231
           P+KY  +++  +   +   T CP +CS++   +WF+
Sbjct: 399 PYKYAVYKI--IGRCDLSKTSCPSICSVTEDYIWFQ 432


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +2

Query: 134  YMKMYFRVQLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLK 313
            Y K       + + S AVS      G+  +  ++T     +   DV T       ++  K
Sbjct: 877  YEKSIAYTSTIDIPSKAVSRVVGRNGST-VENIRTQFDVKIDIGDVSTEETTPVSVRGAK 935

Query: 314  ADVPNICEDLKTIKYDVKNLXQ 379
            ADV N  +++  I  +VKNL +
Sbjct: 936  ADVENAIKEISAIAEEVKNLVE 957


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 335 EDLKTIKYDVKNLXQVFYLTNLALLTNCQNSLKPEV 442
           ED++T   +V +        N   +TNC  S  P V
Sbjct: 373 EDIETYSSEVNSCFSKMLAKNTVCVTNCVKSFSPRV 408


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 27/106 (25%), Positives = 43/106 (40%)
 Frame = +2

Query: 203 LQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVKNLXQV 382
           LQ  +D N++  ILKDN+ S      Y+   G   L       C     +K       + 
Sbjct: 243 LQVNID-NKVDEILKDNIVS------YHQPSGTLSL-------CFSKNELKKHSNLTKEE 288

Query: 383 FYLTNLALLTNCQNSLKPEVLATPTQALDKKDVTIQELYLAVYTLK 520
             L  L L T+C+   +  V++      D K +TI +  L   ++K
Sbjct: 289 LLLRCLTLTTSCRQIKRSSVVSLCNSVFDGKKLTIAKCLLTSSSIK 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,505
Number of Sequences: 5004
Number of extensions: 58281
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)