Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e09
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0040 - 287030-287569,287981-288196,288269-288535                 30   1.5  
04_01_0630 - 8354628-8355803,8355837-8355926                           30   2.0  
02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938     30   2.0  
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869...    29   2.7  
09_04_0520 + 18286435-18287279,18287818-18288697                       29   4.7  

>08_01_0040 - 287030-287569,287981-288196,288269-288535
          Length = 340

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/84 (25%), Positives = 41/84 (48%)
 Frame = +2

Query: 71  KLKKILTNF*HSLLVINTIKTYMKMYFRVQLLILVSIAVSNANILQGTVDINRLQTILKD 250
           ++KKI+T    +LL I  I++Y +   +   L++  I    A  +   +D+  L +   +
Sbjct: 105 QIKKIVTT---NLLTIKKIRSYSQTRQQEVRLVMAKIVEEAATHM--AIDLTELLSCYSN 159

Query: 251 NLKSKDVGTLYYAVRGLKQLKADV 322
           N+K + +  L   VRG+     D+
Sbjct: 160 NMKPQMIAKLQAEVRGVVSKGQDI 183


>04_01_0630 - 8354628-8355803,8355837-8355926
          Length = 421

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 170 LVSIAVSNANILQGTVDINRLQTILKDNLKSKDVG 274
           ++S+ V + NI+  T DIN  +  LK   + KD+G
Sbjct: 76  IISVYVDDLNIIGNTQDINEARHHLKTEFEMKDLG 110


>02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938
          Length = 463

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 590 DDTPANYGYVFALCEHMGCGLWTTSH 667
           D +P  YG+VF  C+H+  G  T +H
Sbjct: 254 DVSPDFYGWVFPKCDHVAVGTGTVTH 279


>01_01_1098 -
           8691312-8692430,8692640-8693509,8694522-8696105,
           8696199-8696258,8696336-8696414,8696494-8696555,
           8697129-8697204,8697367-8697419,8698181-8698270,
           8698411-8698458
          Length = 1346

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +2

Query: 56  LSXNEKLKKILTNF*HSLLVINTIKTYMKMYFRVQLLILVSIAVSNANILQGTVDINRLQ 235
           LS N     I+TN    LL+I  ++       RVQ+  L+ + +  + IL   +  + + 
Sbjct: 568 LSINSDAANIITNGPIMLLLIKMLRLSKTSVLRVQIASLMGLLIRYSTILDIELASSGIF 627

Query: 236 TILKDNLKSK 265
             L D L+ K
Sbjct: 628 NALSDGLRDK 637


>09_04_0520 + 18286435-18287279,18287818-18288697
          Length = 574

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 419 QNSLKPEVLATPTQALDKKDVTIQELYLAVYTLKALGKGTIYD 547
           Q SL PE++A PT A     V   E YLA   +K  G G+  D
Sbjct: 401 QASLFPELIAEPTDARSMSFVGTHE-YLAPEIIKGEGHGSAVD 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,017,335
Number of Sequences: 37544
Number of extensions: 324895
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)