Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e09
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)         42   6e-04
SB_33669| Best HMM Match : EMP70 (HMM E-Value=3.9e-11)                 29   2.7  
SB_8198| Best HMM Match : DUF1430 (HMM E-Value=3.3)                    29   2.7  
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)                      29   4.8  
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)
          Length = 512

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
 Frame = +2

Query: 176 SIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLKADVP---NICEDLK 346
           S+A   A++L    +  RL+   ++    +D+ T +YA++GLK  KA +P   N+C+ ++
Sbjct: 17  SLAAKPASVLS-VAEQARLRQTFQEAAPFRDLETAHYALKGLKFFKAPMPPNQNVCKFVE 75

Query: 347 TIKYDVKNLXQVFYLTN-LALLTNCQNSLK--PEVLATPTQALDKKDVTIQELYLAVYTL 517
               D  ++  V++ ++ + +L NCQ +LK   ++LA   Q    +      ++ AV +L
Sbjct: 76  D-NVDRSSILSVYHASSIIKVLGNCQLNLKDAEQMLADSIQ----EGAPTSTIFYAVSSL 130

Query: 518 KALG 529
             LG
Sbjct: 131 SNLG 134


>SB_33669| Best HMM Match : EMP70 (HMM E-Value=3.9e-11)
          Length = 809

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = -3

Query: 331 NIWHISFQLFQSSNSIIQGAHIFAL*VVFKYGLKAIDIHSALENVGITYCYTH*DEQ 161
           N WH +F L +++ ++  G  IF +       +   D+   ++N+ +T+CY   DE+
Sbjct: 563 NHWHHNFNL-ETNTNLASGQPIFCM-----LNIDVCDVCRIVDNMPVTWCYDVTDEE 613


>SB_8198| Best HMM Match : DUF1430 (HMM E-Value=3.3)
          Length = 211

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 434 PEVLATPTQALDKKDVTIQELYLAVYTLKALGKGTIYDKEDALKNLIQ 577
           P ++A P+   D  D  I   YLA Y L  + + TI+        LIQ
Sbjct: 57  PSIVAQPSSCQDVSDFLIAIEYLAPYKLAKVERNTIFPPRIHTHRLIQ 104


>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 421 LTVCKKGQVCEVKHLL*VLDIILYRFEVLTNIWHISFQLFQSSNSIIQ 278
           LT C  G+  EV H    L ++LY+    +++WH+S  +FQ S   +Q
Sbjct: 237 LTKCPVGE--EVVHRF-YLSLMLYKLMQGSSMWHVS-SVFQVSRGFVQ 280


>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
          Length = 1066

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 56  LSXNEKLKKILTNF*HSLLVINTIKTYMKMYFRVQLL-ILVSIAVSNANILQGTVDINRL 232
           L  N+KLKK L    H+    + IK         +LL + VS   S+ ++LQG +D+N  
Sbjct: 544 LENNDKLKKELQTLGHART--DFIKVRSGTNGESELLDVCVSEISSSYHMLQGVIDVN-- 599

Query: 233 QTILKDNLKSK 265
             +L + LKSK
Sbjct: 600 -VLLLEFLKSK 609


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 30/97 (30%), Positives = 43/97 (44%)
 Frame = +2

Query: 158  QLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICE 337
            QLL+     V N N LQ +V     Q IL   L SK  G L   V  L+QL +    I  
Sbjct: 1031 QLLMDTPSDVENINTLQISVPCP-YQIIL--GLYSK-AGLLSQLVANLEQLSSLNLLIMV 1086

Query: 338  DLKTIKYDVKNLXQVFYLTNLALLTNCQNSLKPEVLA 448
             +  ++  +KN+  +  L   +    C N L P++ A
Sbjct: 1087 IIDIVELCLKNISHLISLDQYSAANLCMNVLAPDMAA 1123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,634,748
Number of Sequences: 59808
Number of extensions: 418749
Number of successful extensions: 831
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)