Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e09
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF078789-3|AAK68487.1|  295|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF078789-2|AAK21516.1|  318|Caenorhabditis elegans Hypothetical ...    29   4.2  
U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alph...    28   7.3  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical
           protein T26H2.1 protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 347 TIKYDVKNLXQVFYLTNL-ALLTNCQNSLKPEVLATPTQ 460
           TI  +  N  QV++  N+ AL + CQNS+ P  L  P +
Sbjct: 82  TISMNFDNSFQVYFYLNIDALESTCQNSIVPLKLGIPNR 120


>AF078789-3|AAK68487.1|  295|Caenorhabditis elegans Hypothetical
           protein Y44E3B.1b protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 233 QTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVK 367
           +T L DN +S D    YY  +  K+  A VPN     K  KY++K
Sbjct: 179 ETSLSDNDESVDDS--YYKPKSSKKTAAAVPNFVPKTKARKYNLK 221


>AF078789-2|AAK21516.1|  318|Caenorhabditis elegans Hypothetical
           protein Y44E3B.1a protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 233 QTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVK 367
           +T L DN +S D    YY  +  K+  A VPN     K  KY++K
Sbjct: 179 ETSLSDNDESVDDS--YYKPKSSKKTAAAVPNFVPKTKARKYNLK 221


>U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical
           protein T27F7.3a protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 239 WFEGD*YPQCLGECWHYLLLYSLR 168
           WFE + + QC+ + WH + L S R
Sbjct: 460 WFESNGWYQCIEKIWHSIALTSSR 483


>AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alpha 2
           mannosyltransferaseprotein.
          Length = 496

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 239 WFEGD*YPQCLGECWHYLLLYSLR 168
           WFE + + QC+ + WH + L S R
Sbjct: 460 WFESNGWYQCIEKIWHSIALTSSR 483


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/76 (18%), Positives = 38/76 (50%)
 Frame = +2

Query: 128 KTYMKMYFRVQLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQ 307
           K  M++   + ++++ ++   +  +L+   D+NR +  LK    ++ V  +      L++
Sbjct: 63  KGTMELMAEIHVMLVKNLQDLSREVLKYKEDVNRTRKELKQPQVAEAVNLMQTTTTCLQK 122

Query: 308 LKADVPNICEDLKTIK 355
            K    + C++L+ +K
Sbjct: 123 AKETYQHRCQELEKVK 138


>AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical
           protein F56D12.6a protein.
          Length = 968

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/76 (18%), Positives = 38/76 (50%)
 Frame = +2

Query: 128 KTYMKMYFRVQLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQ 307
           K  M++   + ++++ ++   +  +L+   D+NR +  LK    ++ V  +      L++
Sbjct: 80  KGTMELMAEIHVMLVKNLQDLSREVLKYKEDVNRTRKELKQPQVAEAVNLMQTTTTCLQK 139

Query: 308 LKADVPNICEDLKTIK 355
            K    + C++L+ +K
Sbjct: 140 AKETYQHRCQELEKVK 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,541,548
Number of Sequences: 27780
Number of extensions: 321992
Number of successful extensions: 678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)