Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e09
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.23 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.52 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.52 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 236  FEGD*YPQCLGECWHYLL 183
            F+G  YP  LG CWH ++
Sbjct: 1454 FDGKDYPLRLGPCWHAVM 1471


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 110 VTSVKNL*VFSLIFHLXIKTNCRPQKYSKSNTFDI 6
           VT  KN  ++ L +H+   T   P+ Y K+ TF++
Sbjct: 32  VTRQKN--IYELFWHVDQPTVYHPELYQKARTFNL 64



 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 464 LDKKDVTIQELYLAVYTLKALGKGTIYDKEDALKNLIQLLKKDDTPANYGYVFAL 628
           +D+  V   ELY    T   +     Y+ ++A+   +QLLK    P   G VF +
Sbjct: 45  VDQPTVYHPELYQKARTFNLVENLDNYNDKEAVNEFMQLLKHGMLPR--GQVFTM 97


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 110 VTSVKNL*VFSLIFHLXIKTNCRPQKYSKSNTFDI 6
           VT  KN  ++ L +H+   T   P+ Y K+ TF++
Sbjct: 32  VTRQKN--IYELFWHVDQPTVYHPELYQKARTFNL 64



 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 464 LDKKDVTIQELYLAVYTLKALGKGTIYDKEDALKNLIQLLKKDDTPANYGYVFAL 628
           +D+  V   ELY    T   +     Y+ ++A+   +QLLK    P   G VF +
Sbjct: 45  VDQPTVYHPELYQKARTFNLVENLDNYNDKEAVNEFMQLLKHGMLPR--GQVFTM 97


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +2

Query: 185 VSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLKADVPNIC 334
           +SN N L    + N       +N  +      YY +  ++Q+   VP  C
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYC 131


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 299 LKQLKADVPNICEDLKTIKYDVKNLXQVFYLTNLALL 409
           L  L+ D+ N  + LK I++  KNL  +  L N A +
Sbjct: 58  LVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATI 94


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 82  NTYKFLTLVTSNKYN*NLYEN 144
           N YK+      N YN N Y N
Sbjct: 320 NNYKYSNYNNYNNYNNNNYNN 340


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 403 GQVCEV-KHLL*V-LDIILYRFEVLTNIWHISFQLFQSSNSIIQGA 272
           GQ+ EV +H     L I L R E+L +  H++F+L   + +  Q +
Sbjct: 146 GQIREVARHFYHKELQIELVREEILFDTVHVTFKLTFDNRAFTQAS 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,592
Number of Sequences: 438
Number of extensions: 3727
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)