Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e08
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    31   0.73 
AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical ...    29   3.9  
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    29   3.9  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    28   5.1  
AL032645-1|CAA21674.1|  123|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF016425-8|AAD34667.2|  239|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z68882-13|CAA93102.1|  296|Caenorhabditis elegans Hypothetical p...    28   6.8  
AF026204-7|AAB71247.1|  272|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 454 DRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRA-FNSKSKKIPIGKVVSTPRKRLKQH 630
           D  +   ++  Y     E +N   S ++RVV + A    K    P G V +TP K+ K  
Sbjct: 748 DNFSGGGSTPSYSKSYLEEMNRVMSTRKRVVEEAAEVQKKPNPAPSG-VTATPPKKAKTS 806

Query: 631 TNTPPH 648
            + PP+
Sbjct: 807 NSVPPN 812


>AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical
           protein H16D19.4 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 387 LVGGFARNPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKRLDK*LFG 229
           + GG   +P        N L F  F    HSN  +A++ + ++ K++D  + G
Sbjct: 276 IAGGVTFHPSAMYTRNSNFLNFANFIIMQHSNKEIASMRYELMKKKVDSDVIG 328


>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +1

Query: 478 STDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQHT 633
           S +YD ED E  +   ++KR  + KR  NSKSK   +GK    PRK+ +  T
Sbjct: 24  SFNYDDEDYEPPSK-RTQKRSSLTKR--NSKSKTPEVGK---APRKQTEHFT 69


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +1

Query: 439 KTKSNDRLNNENTST----DYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVST 606
           K K   RL  EN       D D++DE+       +++   A+++  S SKK   GK    
Sbjct: 172 KRKEKKRLEKENRKIKEEDDEDSDDEDDEKAKKKKRKSKGAEKSKPSTSKKDAGGK-KEP 230

Query: 607 PRKRLKQ 627
           P+K++K+
Sbjct: 231 PKKKVKK 237


>AL032645-1|CAA21674.1|  123|Caenorhabditis elegans Hypothetical
           protein Y67A6A.1 protein.
          Length = 123

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 436 TKTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK 615
           TK KSN  ++   TS D + +D+         K    AK     K+K+    KVV+TP+K
Sbjct: 22  TKKKSNLSISKSQTSVDMNEKDKS--------KEAKEAKELKEKKAKEEAEKKVVATPKK 73


>AF016425-8|AAD34667.2|  239|Caenorhabditis elegans Hypothetical
           protein F59A7.5a protein.
          Length = 239

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 457 RLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRL 621
           R N   +S+  +  D++     + RK++   K+   +K KK+   K   T +K+L
Sbjct: 103 RSNKNASSSGSEENDQKDGQEDHHRKKKGATKKKVTTKKKKVTTKKPKKTTKKKL 157


>Z68882-13|CAA93102.1|  296|Caenorhabditis elegans Hypothetical
           protein C47E12.10 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +1

Query: 469 ENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK 615
           E + ++ +TEDE+   + N R+R+   KRA + K KKI   KV +  ++
Sbjct: 46  EKSESEDETEDED---SENQRRRK---KRAADKKRKKIKAAKVAAQKKE 88


>AF026204-7|AAB71247.1|  272|Caenorhabditis elegans Hypothetical
           protein C30E1.2 protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -1

Query: 368 GIQEFFNVFILTYFSSSAFLALC---IAMSSSPPFIL 267
           GIQ++  ++IL + S+S FLAL      +S  P FI+
Sbjct: 40  GIQKWQQLYILAFSSASQFLALAANIFELSGVPGFII 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,198,847
Number of Sequences: 27780
Number of extensions: 206424
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)