Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e06
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...   113   3e-26
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    28   1.1  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   4.5  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   4.5  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score =  113 bits (271), Expect = 3e-26
 Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 2/195 (1%)
 Frame = +3

Query: 117 SFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAADPKLSN 296
           SF+L      ++K   G  V ++++G+N  ED + GY      Q++ VC+ +  +  LSN
Sbjct: 40  SFTLTEVSQRVQKLTKGA-VYAIRVGDNEFEDIKAGYLGKLEDQLDEVCDLIGNEDSLSN 98

Query: 297 GFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCDDVRK 476
           GF  +G SQG  F+RA+ Q C     +I+++++LG  H GI  IP C          V  
Sbjct: 99  GFYALGLSQGGLFLRALAQTC--DAAKIRSLITLGSPHSGINTIPGCSPTNLICKAVVHS 156

Query: 477 LLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINN-VRTVNKT-YIQNLNNLE 650
           +L    ++SW+QN +VQA Y+        Y  N+ FL  +NN V   N T  I+ L  L+
Sbjct: 157 ILGLGIWHSWIQNHVVQAQYYRTEKQYDKYLENNKFLTHLNNEVLHDNYTRNIEKLKELD 216

Query: 651 RFVLVMFDNDSIVQP 695
             V V F+ D IV+P
Sbjct: 217 NLVAVSFERDDIVEP 231


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 459 CDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVF 584
           C   RK+++    N  + +S V A Y+ DP+DE   +  S F
Sbjct: 211 CTVPRKIVHVLQKNKNLISSAVNAFYYRDPIDENYCDRMSKF 252


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
 Frame = -1

Query: 361 PHLCTTARIN*HPCEKPMTLNPFDSFGSAANFSHTYSTWRFGFMKYPFSKSSTV-LLPIW 185
           P     A  N  P  +P   N FD   S+++F+H    +R+     P S  ST    P +
Sbjct: 349 PQSLRYAHYNYLPYSRPSVSNGFDDDSSSSDFAH----FRYQRRSRPVSPCSTAPSSPTF 404

Query: 184 RDRT*TPGMFFSRNI--LKEPRLKDMQHVSLSLLP 86
             R+ +P    +  +     PRL+ M   S   LP
Sbjct: 405 STRSFSPTPDVTPLVTPAHSPRLRPMDDPSCVQLP 439


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 468 VRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVF 584
           + ++ N      W +NSL+    W D  D  T   N  F
Sbjct: 86  IDEIFNSTQVPEWAKNSLLDTNTWLDTSDFNTSFTNETF 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,153
Number of Sequences: 5004
Number of extensions: 61581
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)