Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5e06
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856... 88 7e-18
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984... 56 2e-08
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032... 29 2.7
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609... 29 2.7
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533... 29 4.7
08_01_0588 + 5222536-5222656,5222887-5223440 28 6.2
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 28 8.2
>03_01_0008 +
84955-85048,85165-85225,85375-85426,85554-85661,
85662-85715,86140-86190,86348-86410,87048-87113,
87190-87228,87493-87615,88251-88343,88437-88661
Length = 342
Score = 87.8 bits (208), Expect = 7e-18
Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Frame = +3
Query: 285 KLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCD 464
+LSNG+N++G SQG RAVV+ C P +KN +SLGG H G +P CG+ C
Sbjct: 111 ELSNGYNIVGLSQGNLIGRAVVEFCDDG-PPVKNFISLGGPHAGTASVPLCGS--GIFCI 167
Query: 465 DVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINN--VRTVNKTYIQNL 638
L+ Y+ +VQ L + Y P D Y FL +NN N TY +
Sbjct: 168 LADSLIKMEIYSDYVQAHLAPSGYMKIPTDISDYLKGCRFLPKLNNELPGERNATYKERF 227
Query: 639 NNLERFVLVMFDNDSIVQPK 698
++LE VL+MF +D+++ P+
Sbjct: 228 SSLENLVLIMFQDDAVLIPR 247
>10_08_0939 +
21696941-21697049,21697171-21697255,21698385-21698457,
21698553-21698609,21698660-21698713,21699196-21699246,
21699441-21699503,21700453-21700518,21700625-21700663,
21702190-21702271,21703479-21703536,21703698-21703914,
21704248-21704697
Length = 467
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/103 (32%), Positives = 53/103 (51%)
Frame = +3
Query: 240 NLQVEYVCEKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGI 419
NL Y+C + +L G++++G SQG RAV++ C P +KN +S+GG H G
Sbjct: 100 NLHHFYLCT-VKKMKELRKGYSIVGLSQGNLIGRAVIEYCDGG-PPVKNFISIGGPHAGT 157
Query: 420 YGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDP 548
+P CG+ C + L+ Y+++VQ L + Y P
Sbjct: 158 ASVPLCGS--GIVCVLIDALIKLEIYSNYVQAHLAPSGYLKIP 198
>07_03_1546 +
27602598-27602917,27602995-27603052,27603130-27603252,
27603896-27603992,27604095-27604131,27604244-27604349,
27604547-27604604,27604705-27604802,27604911-27605030,
27605622-27605667,27606336-27606522,27606747-27607263,
27607361-27607453,27608101-27608286,27608364-27608574,
27609263-27609387,27609518-27609664,27610114-27610236,
27610445-27610799,27611076-27611305,27611785-27611877
Length = 1109
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -1
Query: 316 KPMTLNPFDSFGSAANFSHTYSTWRFGFMKYPFSKSSTVLLPIWRDRT*TPGMFFS 149
+P+ P S GS+A +Y TW F + SS + +W R P FS
Sbjct: 159 EPVVFPPLKSVGSSAQAEISYLTWNPKFQHILATASSNGMTVVWDLRNQKPLTSFS 214
>04_03_0858 +
20357519-20357573,20358072-20358119,20360675-20360922,
20361152-20361363,20361480-20361741,20361832-20362143
Length = 378
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/106 (23%), Positives = 49/106 (46%)
Frame = +3
Query: 264 EKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGA 443
E+LA + +L F +MGFS G + + + ++ H+L + + +G G+P
Sbjct: 154 EELADNLQLGPKFYLMGFSMGGEIMWSCLKHISHRLAGVAILAPVGNYWWS--GLP---- 207
Query: 444 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSV 581
+ + + L + WV + L TYW + ++ + A+SV
Sbjct: 208 -SNMSWHVWNQQLPQDKWAVWVSHHLPWLTYWWN--SQKLFPASSV 250
>04_03_0857 +
20352331-20352582,20352740-20352951,20353047-20353308,
20353418-20353726
Length = 344
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/106 (23%), Positives = 49/106 (46%)
Frame = +3
Query: 264 EKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGA 443
E+LA + +L F +MGFS G + + + ++ H+L + + +G G+P
Sbjct: 121 EELADNLQLGPKFYLMGFSMGGEIMWSCLKHISHRLAGVAILGPVGNYWWS--GLP---- 174
Query: 444 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSV 581
+ + + L + WV + L TYW + ++ + A+SV
Sbjct: 175 -SNVSWHAWNQQLPQDKWAVWVSHHLPWLTYWWN--SQKLFPASSV 217
>08_01_0588 + 5222536-5222656,5222887-5223440
Length = 224
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 340 RIN*HPCEKPMTLNPFDSFGSAANFSHTYST 248
R+N PC+ PM +N D F +AA F ST
Sbjct: 42 RVNGFPCKNPMEVNS-DDFFNAAKFDMPRST 71
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 240 NLQVEYVCEKLAADPKLSNGFNV 308
N++ E KLA +PK+SNG +V
Sbjct: 1606 NMKAEKAAAKLAKEPKISNGVSV 1628
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,159,273
Number of Sequences: 37544
Number of extensions: 375359
Number of successful extensions: 790
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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