Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e06
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54718| Best HMM Match : Palm_thioest (HMM E-Value=1.8e-07)         109   2e-24
SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_53079| Best HMM Match : TPR_1 (HMM E-Value=0)                       29   2.7  
SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_52151| Best HMM Match : TPR_1 (HMM E-Value=0)                       28   8.4  
SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)                        28   8.4  

>SB_54718| Best HMM Match : Palm_thioest (HMM E-Value=1.8e-07)
          Length = 144

 Score =  109 bits (263), Expect = 2e-24
 Identities = 56/116 (48%), Positives = 72/116 (62%), Gaps = 11/116 (9%)
 Frame = +3

Query: 384 NMVSLGGQHQGIYGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERT 563
           N++S GGQHQG+YG PHC       C+ VR+LLN  AY      SLVQA YWHDP++E+ 
Sbjct: 3   NLISFGGQHQGVYGFPHCPGDNSTLCNYVRELLNIGAY-----VSLVQAEYWHDPMNEKE 57

Query: 564 YEANSVFLADINN-----------VRTVNKTYIQNLNNLERFVLVMFDNDSIVQPK 698
           Y   S+FLADIN            ++T N TY +NL  L+ FV+VMF  D++V PK
Sbjct: 58  YRDKSIFLADINQEKFTLQRLIFVLQTKNPTYKENLMKLKNFVMVMFAKDTMVDPK 113


>SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 125 SWFLQNIPREEHTWCLCSVS 184
           +WF   + R +H++CLCSVS
Sbjct: 815 TWFAGELMRRKHSYCLCSVS 834


>SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 261 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLGI 142
           ++  LGD+G   ++++N    Y +FGE   +  V S++GI
Sbjct: 238 VYKSLGDNGQAMVNYKNALCIYEKFGEEREQADVYSNIGI 277



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 261 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLGI 142
           I+  LGD G   ++++N    Y +FGE   +  V S++G+
Sbjct: 158 IYSSLGDDGQAILNYKNALCIYEKFGEKREQADVYSNIGL 197


>SB_53079| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 772

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 261 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLGI 142
           + I LGD+G   ++F+N    Y +FGE   +  V +++GI
Sbjct: 310 VFISLGDNGQAMVNFKNALCIYEKFGEECKQADVYNNIGI 349


>SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 324 GCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETC 461
           GC+ +  ++Q  G+KL ++    +  G  +  Y    C ALRHE C
Sbjct: 669 GCKEVLTLLQNFGNKLTKLDLTFNSIGDEEAKY---ICEALRHENC 711


>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 276 PLTSHIHIQLGDSGS*NIHFQNLQQYYCQFGETEHKH 166
           PLT H HI+L  +   +I   + Q  + +   T+H H
Sbjct: 206 PLTQHTHIRLPSTQHTHIRLPSTQHSHIRLPSTQHSH 242


>SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = -2

Query: 261 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLGI 142
           +++ LGD+G   ++++N    Y +FGE   +  V +++G+
Sbjct: 157 LYMTLGDNGQAMVNYKNALCIYEKFGEERKQADVYNNIGV 196


>SB_52151| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1137

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 261 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLG 145
           ++  LGD+G   ++++N    Y +FGE   +  V +S+G
Sbjct: 190 VYESLGDNGQAMVNYKNALCIYEKFGEERKQADVYNSIG 228


>SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)
          Length = 158

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 480 VASSHHHMFRVSRHHNEVCHRCLGADLR 397
           + SSHHH      H +  CH+ +   +R
Sbjct: 108 ITSSHHHHHHHHHHQHRGCHKAVAGHVR 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,722,966
Number of Sequences: 59808
Number of extensions: 465441
Number of successful extensions: 1092
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)