Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e06
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50313-5|AAA92329.1|  270|Caenorhabditis elegans Palmitoyl prote...   207   5e-54
AY691522-1|AAU01161.1|  254|Caenorhabditis elegans palmitoyl pro...   207   7e-54
Z93778-3|CAB07846.1|  446|Caenorhabditis elegans Hypothetical pr...    32   0.34 
AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z48783-6|CAA88700.1|  371|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z82070-4|CAB04913.2|  227|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70207-8|CAM33501.1|  835|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70207-5|CAA94127.2|  914|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF316542-1|AAG50270.1|  914|Caenorhabditis elegans serine/threon...    27   9.8  
AF000299-5|AAC47977.1|  335|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U50313-5|AAA92329.1|  270|Caenorhabditis elegans Palmitoyl protein
           thioesteraseprotein 1 protein.
          Length = 270

 Score =  207 bits (506), Expect = 5e-54
 Identities = 98/199 (49%), Positives = 133/199 (66%)
 Frame = +3

Query: 102 DTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAAD 281
           D CC   S+GS K   E+ IPGVYV SLQ+G++  +D E+G++ N N  V   C K+  D
Sbjct: 7   DCCCNPLSMGSVKKLFEEQIPGVYVHSLQLGSSITKDIEHGFYANTNELVYMACIKIKND 66

Query: 282 PKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETC 461
           P+L NG+N +GFSQG QF+RAV QRC +  P +KN+VS+GGQHQG++G P+C    +  C
Sbjct: 67  PELKNGYNAIGFSQGAQFLRAVAQRCPN--PPMKNLVSVGGQHQGVFGAPYCIG-DNIMC 123

Query: 462 DDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTVNKTYIQNLN 641
           + VR+L++  AY  +VQ  +VQA YWHDP     Y+  S+FLADINN    N TY +NL 
Sbjct: 124 NGVRRLIDLGAYLPFVQKRVVQAQYWHDPNQVEEYKKRSIFLADINNENNNNPTYKRNLL 183

Query: 642 NLERFVLVMFDNDSIVQPK 698
           +L+  VLV F+ D +V PK
Sbjct: 184 SLKNLVLVKFNQDHMVVPK 202


>AY691522-1|AAU01161.1|  254|Caenorhabditis elegans palmitoyl
           protein thioesterase protein.
          Length = 254

 Score =  207 bits (505), Expect = 7e-54
 Identities = 98/199 (49%), Positives = 133/199 (66%)
 Frame = +3

Query: 102 DTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAAD 281
           D CC   S+GS K   E+ IPGVYV SLQ+G++  +D E+G++ N N  V   C K+  D
Sbjct: 7   DCCCNPLSMGSVKKLFEEQIPGVYVHSLQLGSSITKDIEHGFYANTNELVYMACIKIKND 66

Query: 282 PKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETC 461
           P+L NG+N +GFSQG QF+RAV QRC +  P +KN+VS+GGQHQG++G P+C    +  C
Sbjct: 67  PELKNGYNAIGFSQGAQFLRAVAQRCPN--PPMKNLVSVGGQHQGVFGAPYCIG-DNIMC 123

Query: 462 DDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTVNKTYIQNLN 641
           + VR+L++  AY  +VQ  +VQA YWHDP     Y+  S+FLADINN    N TY +NL 
Sbjct: 124 NGVRRLIDLGAYLPFVQKRVVQAQYWHDPNQVXEYKKRSIFLADINNENNNNPTYKRNLL 183

Query: 642 NLERFVLVMFDNDSIVQPK 698
           +L+  VLV F+ D +V PK
Sbjct: 184 SLKNLVLVKFNQDHMVVPK 202


>Z93778-3|CAB07846.1|  446|Caenorhabditis elegans Hypothetical
           protein C31H5.6 protein.
          Length = 446

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +3

Query: 240 NLQVEYVCEKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQH 410
           ++ VEY  + +     LS   N++G  QG  F   +V     + PQIK +VS+ G H
Sbjct: 211 DVDVEYFLKPIEFVLGLSYTTNMLGI-QGVSFGATIVDLLSTRYPQIKAVVSINGPH 266


>AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5a protein.
          Length = 595

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 486 YAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTVNKTYIQNLNNL 647
           YA YN +  + LV++TYW  P  E T +  S   AD+     + +  + ++ +L
Sbjct: 451 YALYNRYGFH-LVRSTYWMVPAPEVTKKLFSTLRADLKFPTKIGEAEVASVRDL 503


>Z48783-6|CAA88700.1|  371|Caenorhabditis elegans Hypothetical
           protein F33H1.5 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 640 FKFCIYVLLTVLTLLMSARNTLFA--SYVRSSKGSCQYVA 527
           F F I+ LLT +  L++ + T+F+  S      G C+YV+
Sbjct: 66  FNFAIFDLLTCVASLLACQKTIFSGLSLTYIFHGPCKYVS 105


>Z82070-4|CAB04913.2|  227|Caenorhabditis elegans Hypothetical
           protein W04E12.4 protein.
          Length = 227

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 447 RHETCDDV-RKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTVNKT 623
           ++ET DD+  +L+  + Y  W+  +L +A         R YE  +  +  I+  R   K 
Sbjct: 13  KNETWDDILNELMENSEY--WMDMTLPKAE------QRRNYEKMAEVMRRIDVCRERQKA 64

Query: 624 YIQNLNNLERFV 659
            +Q L NLE+ V
Sbjct: 65  TLQKLRNLEKLV 76


>Z70207-8|CAM33501.1|  835|Caenorhabditis elegans Hypothetical
           protein F15A2.6b protein.
          Length = 835

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 40  AKFGLAKLRRSYCMFRVTTKVTHAACPLVLVPSKYS*RR 156
           A FG+A L+    M   +    H ACP V+   KY  R+
Sbjct: 186 ADFGMASLQVEGSMLETSCGSPHYACPEVIRGEKYDGRK 224


>Z70207-5|CAA94127.2|  914|Caenorhabditis elegans Hypothetical
           protein F15A2.6a protein.
          Length = 914

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 40  AKFGLAKLRRSYCMFRVTTKVTHAACPLVLVPSKYS*RR 156
           A FG+A L+    M   +    H ACP V+   KY  R+
Sbjct: 186 ADFGMASLQVEGSMLETSCGSPHYACPEVIRGEKYDGRK 224


>AF316542-1|AAG50270.1|  914|Caenorhabditis elegans serine/threonine
           kinase SAD-1 protein.
          Length = 914

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 40  AKFGLAKLRRSYCMFRVTTKVTHAACPLVLVPSKYS*RR 156
           A FG+A L+    M   +    H ACP V+   KY  R+
Sbjct: 186 ADFGMASLQVEGSMLETSCGSPHYACPEVIRGEKYDGRK 224


>AF000299-5|AAC47977.1|  335|Caenorhabditis elegans Hypothetical
           protein E03H12.3 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 640 FKFCIYVLLTVLTLLMSARNTLFASYVRSSKGSCQYVA*TSEF 512
           F FC +++  +L L  S    LF  Y  S    C+    TS F
Sbjct: 31  FSFCFFIISIILELNASVNMLLFWGYPASDTKFCEPQLKTSTF 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,132,032
Number of Sequences: 27780
Number of extensions: 353041
Number of successful extensions: 839
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)