Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e02
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0830 + 25159758-25162460                                         30   2.0  
09_02_0060 + 3729613-3729863,3730377-3730392                           28   6.1  
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805...    28   6.1  
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774...    28   6.1  
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294...    28   8.1  
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773           28   8.1  

>06_03_0830 + 25159758-25162460
          Length = 900

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 29/103 (28%), Positives = 42/103 (40%)
 Frame = +1

Query: 271 WTNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAE 450
           W  +   ++   ASP      E   S  ++R    L +  V+    A     LS   +  
Sbjct: 554 WKGSAATSAFRPASPRCTPDGEKSVSASSQRTGNALFDLNVSESDNATAGEPLSAAIL-- 611

Query: 451 KPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNV 579
            PLS D + K+ S  VG NS+ L    +       AA T+SNV
Sbjct: 612 -PLSSDIVRKDASATVGLNSLELD--LNCPCDDEEAAITTSNV 651


>09_02_0060 + 3729613-3729863,3730377-3730392
          Length = 88

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 403 ANWPPGRY*ALRLIVCSRLIPPIRC 329
           A WPP RY + R   C R +P + C
Sbjct: 35  AKWPPSRYRSYR-ATCCRAVPSLLC 58


>04_04_1401 +
           33279092-33279286,33280223-33280306,33280459-33280524,
           33280945-33281028,33281181-33281246,33281719-33281802,
           33281955-33282020,33282323-33282388,33282667-33282726,
           33282805-33282888,33282968-33283111,33283552-33283586,
           33283694-33283746,33283828-33283928,33284516-33284974
          Length = 548

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 346 SDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGT 525
           SD+NK  + KL +   ++ R   GDNK       +K   +D   +  +N +      L  
Sbjct: 202 SDDNKSDSCKLRDKTTSDDRSKSGDNKYDSCKTRDKKPIVDLADEFENNTIKKKITLLSE 261

Query: 526 VYDY 537
            YD+
Sbjct: 262 KYDF 265


>02_05_0642 +
           30576158-30576289,30576436-30576503,30577167-30577487,
           30578318-30579146
          Length = 449

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 358 CSRLIPPIRC-SALNWATPRLR 296
           CS  +PP+RC   L W+ PR++
Sbjct: 23  CSSRLPPLRCFVGLRWSAPRIQ 44


>10_08_1063 -
           22628642-22628716,22628806-22629012,22629325-22629433,
           22629547-22629657,22630466-22630513,22630636-22630713,
           22632151-22632254,22632360-22632470,22632555-22632791
          Length = 359

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 274 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 453
           T   N+  L + SP+    S+ +E D  KR+           L I +G + +     +E+
Sbjct: 154 TGLHNIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEIRLVILNGGSMIYYSNPSEQ 213

Query: 454 PLSID 468
           P S+D
Sbjct: 214 PFSVD 218


>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
          Length = 944

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = +1

Query: 283 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 462
           ++ + L +    LG   E  + DE  RL   + +   A+  +  GDN    M+ ++  + 
Sbjct: 450 ISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVR 509

Query: 463 IDDIVKEGS 489
           + D+V++ +
Sbjct: 510 LHDVVRDAA 518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,952,514
Number of Sequences: 37544
Number of extensions: 353133
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)