Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5e02
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05) 33 0.29
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17) 31 0.89
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59) 29 2.7
SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3) 28 8.3
SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19) 28 8.3
SB_18791| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)
Length = 340
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = -2
Query: 675 VLYSFSGRYTFEYNKHGFKFLDIKVCGAARHGHITRCAGRVWRFNSIVVYGAQKNAVSAH 496
++ S+ R +FE NK+ ++ K C G+I G + +VV G+ NA+
Sbjct: 203 LMRSYKFRLSFE-NKNCVDYITEKYCYPLEKGNIPIVLGGASYDSKLVVPGSYINALDFP 261
Query: 495 FVGALFDYVVY 463
V AL DY+ Y
Sbjct: 262 SVKALADYIQY 272
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 32.7 bits (71), Expect = 0.29
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Frame = +1
Query: 322 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 501
G SE++ +K ++ +NA+ L AHG LS+ + E L+ D V GS+
Sbjct: 833 GIQSENMRKLRSKAVDKATSNAKENALNAAHGAKALSEELLFEITLATVDQVVVGSDATK 892
Query: 502 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVE 672
+ +Y ++ N A +++ T ++ F++ KG VE
Sbjct: 893 LSYGIKNLELEYESLRDDNLALSAAAAYQNGATFFYEKVNLHKTFVISKGTDSIINVE 950
>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
Length = 1775
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 418 DNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGT 597
+ +L + +I K L+++ I K+ N GT+ + T DYG S N N R T
Sbjct: 1375 ERRLGKPHIGRKTLAVNKIDKDDDNDDGTDEVVKQTFDDYG--SRNEVVWHGNRIQERST 1432
Query: 598 ANFDIKE 618
++E
Sbjct: 1433 KRAALEE 1439
>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Frame = +1
Query: 322 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 501
G SE++ +K + +NA+ L AHG LS+ + E L+ D V GS+
Sbjct: 242 GIQSENMRKLRSKAGDKATSNAKENALNAAHGAKALSEALLFEITLATVDQVVVGSDATK 301
Query: 502 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKG 648
+ +Y ++ N A +++ T ++ F++ KG
Sbjct: 302 LSYGIKNLELEYESLRDDNFARSAAAAYQNGTTFFYEQVNLHKTFVISKG 351
>SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)
Length = 246
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Frame = +1
Query: 322 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 501
G SE++ +K + NA+ L AHG LS+ + E L+ D+V GS+
Sbjct: 125 GIQSENMRKLRSKAGDKATGNAKENALNAAHGAKALSEALLFEITLATVDLVVVGSDATK 184
Query: 502 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKG 648
S + + +Y ++ N A +++ T + F++ KG
Sbjct: 185 L-SYGVKNLEEYESLRDDNLARSAAAAYQNGTTFFYKQVNLPKTFVISKG 233
>SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +1
Query: 280 ALNLNSLTEASPSLGQSSESVESDENKRLNVKLNN----ARVANLRIAHGDNKLSQMYIA 447
+L L L E P+L ++ +SD+ + ++L N R R+ GD Q+ +A
Sbjct: 77 SLGLQFLREEYPNLDENLIRFQSDQRGKTLIQLRNLGKGGRCKAGRVQAGDGVSCQLSVA 136
Query: 448 EKPLSIDDIVKEGSNKV 498
E ID +++E + +V
Sbjct: 137 E----IDAVIQENTERV 149
>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 355 SRLIPPIR-CSALNWATPRLRNLNLMHSSNRDKSVRAKRSI 236
S ++PP R S+ W PR RNL + S R K R +R++
Sbjct: 156 SVVLPPHRLASSTKWTRPR-RNLEVGDISTRQKWTRPRRNL 195
>SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 718
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 51 LTIANSLSRPFSKFLRSAVKSLWPCPSIGKTIIEVYF*NICT 176
L +A+S SR F + A++ L P PS + + F +CT
Sbjct: 155 LNLAHSFSRLFMRKHSHALRHLLPLPSFDSLVKQTTFVMLCT 196
>SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)
Length = 736
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = +1
Query: 322 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 501
G SE++ +K + +NA+ L AHG LS+ + E L+ D V GS+
Sbjct: 457 GVQSENMRKLRSKAGDKATSNAKENALNTAHGAKALSEALLFEITLATVDQVVVGSDATK 516
Query: 502 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIV 639
+ +Y +K N A +++ T ++ F++
Sbjct: 517 LSYGIKNLELEYESLKDDNLARSAAAAYQNGTTFFYEQVNLHKTFVI 563
>SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)
Length = 1562
Score = 27.9 bits (59), Expect = 8.3
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 1/124 (0%)
Frame = +1
Query: 322 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 501
G SE++ +K + +NA+ L AHG LS+ + E + D V GS+
Sbjct: 792 GIQSENMRKLRSKAGDKATSNAKEIALNAAHGARALSEALLFEITFATVDQVVVGSDATK 851
Query: 502 TNSIFLGTVYDY-GVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVEDN 678
+ +Y ++ N A +++ T ++ F++ K +T +K E
Sbjct: 852 LSYGIKNLELEYESLRDDNLARSAAAAYQNGTTFFYEQVNLYKTFVISK-VTDSKIKESV 910
Query: 679 GMLR 690
+ R
Sbjct: 911 NLPR 914
>SB_18791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.9 bits (59), Expect = 8.3
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Frame = +1
Query: 274 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 453
T + +S +EAS S V + + + + HG++ S +A K
Sbjct: 6 TKKADQDSGSEASSPAASDSTPVSESQKEESRRRSGRQSKQRILFGHGESPASTSSLARK 65
Query: 454 P------LSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRG 594
P +++D+ E ++ G +S F G+ ++P T T TRG
Sbjct: 66 PGSTKKRVTVDESGSEDEDRTGKSSDFEGSSDRSDDETP--TPTPKKNTPTRG 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,123,395
Number of Sequences: 59808
Number of extensions: 422787
Number of successful extensions: 1008
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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