Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5e01
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.15 
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                28   1.9  
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                27   3.3  
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      27   3.3  
SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)        27   4.4  
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)                   27   5.8  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)                26   7.7  
SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)                      26   7.7  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           26   7.7  

>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 15  LSTFVSERFTKMAKR---TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 164
           +ST  S  + K+  R   T+  GIT    T Y +S +K+V +   T+ A  TC
Sbjct: 1   MSTHYSSPYKKLVPRQLTTRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITC 53



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 15  LSTFVSERFTKMAKR---TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 164
           +ST  S  + K+  R   T+   IT    T Y +S +K+V +   T+ +  TC
Sbjct: 28  MSTHYSSSYKKLVPRQLTTRWASITCMMSTHYSSSYKKLVPRSLTTRWSGITC 80


>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 35  EVYQNGQTYQKGWNYWQIWHTLRCL 109
           + YQ     + GW  WQIW  LR +
Sbjct: 644 DTYQGRPLMKYGWLKWQIWRALRLI 668


>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 102 GASLRKMVKKMEVTQHAKYTCSFCGK 179
           G   +K ++  E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234


>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 181 SLPQNEQVYFACWVTSIFLTIL 116
           S P +  V FA W  SIFLTI+
Sbjct: 133 SAPTSLSVIFAAWFLSIFLTII 154


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 164 LILW*GCYETFL-CRHLVL*AMQEDCSRRSLGILHYCCLIMQICCQEV 304
           ++L  GCY   L C H+V   M   C    + +L   C++M ICC +V
Sbjct: 127 VVLSLGCYVVMLLCHHVV---MSLSCY---IDMLLCRCVVMSICCYDV 168


>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 199 QERFIASLPQNEQVYFACWVTSIFLTILRRE 107
           +++  AS  + E  ++ CWV S F+T  + +
Sbjct: 167 RKKIAASCWEKESEFYECWVASFFITTAKTQ 197


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 159 TCSFCGKDAMKRS 197
           TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255


>SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)
          Length = 893

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -3

Query: 289 DLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLT 122
           D H    V EN +    T    RL D +   +  +  +  +  VYF       FLT
Sbjct: 670 DKHSAEHVAENVKPSCKTGSTRRLLDTLVAMQLLVKEMDSDPPVYFNSQTAEAFLT 725


>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
          Length = 292

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 298 LTADLHDEAAVVENTQAP 245
           +TADLHD A VV N + P
Sbjct: 247 ITADLHDTARVVVNLRTP 264


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 298  LTADLHDEAAVVENTQAP 245
            +TADLHD A VV N + P
Sbjct: 972  ITADLHDTARVVVNLRTP 989


>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
          Length = 815

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 35  EVYQNGQTYQKGWNYWQIWHTLRCL 109
           +VY+N    + G   WQIW  LR +
Sbjct: 643 DVYRNEPLQRYGMLKWQIWRALRLI 667


>SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)
          Length = 438

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 252 KLLLLQSSCIAYKTRCRHKNVS*HPYHKMSKYTLRVGL 139
           +++ LQS    YK  C  KNV  HP      Y LR+GL
Sbjct: 110 RVVTLQSDSYPYK--CYIKNVLSHPQESQESY-LRLGL 144


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 3   FFFSLSTFVS-ERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQ 146
           F F L +F S  ++ +MAK T+  G+     TR+ + ++  +      Q
Sbjct: 614 FTFPLHSFPSLNKYWRMAKETEPFGVDSTIHTRFNSLIQDRISSQGTRQ 662


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,870,049
Number of Sequences: 59808
Number of extensions: 227928
Number of successful extensions: 623
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)