Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d22
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    27   1.6  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   6.3  

>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 22/83 (26%), Positives = 38/83 (45%)
 Frame = +2

Query: 119 LLQYICCVETARLMNRSSTIIAP**RETSYSTRNRFNSTGTAIRNHSLFAQTLLLHRTTI 298
           L+ Y+  ++  R M   + II P  R     T +  +  G     H+L  QT +   T+ 
Sbjct: 191 LISYMSILDPKREM--VTPIITP--RFAPSCTEDLLSGCGELAEKHNLPIQTHISENTSE 246

Query: 299 FFVIWTIFYVIKSYSNIYK*IKL 367
             ++  +F   KSY+++Y   KL
Sbjct: 247 IELVKELFPERKSYADVYDYYKL 269


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 489 HDNRFMKHVCT*KSVIKVANVSN--KKNGAY 575
           HD+ F+ HVCT   +I    V N  KK G Y
Sbjct: 618 HDSSFLDHVCT--DIIHYEGVKNQAKKLGYY 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,264
Number of Sequences: 5004
Number of extensions: 47578
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)