Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d22
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)               27   8.6  

>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = -3

Query: 285  WSNKVWANNEWFLIAVPVE--LKRFLVLYEVSR---YYGAIMVEDRFMSRAVSTQQIYCN 121
            W  +    N+WF+  VP++    +  V++E  R   Y G I ++D  +      Q  YC+
Sbjct: 1381 WQRQKDQGNQWFIAQVPIQNIYTQMKVVFEGVRGFSYQGDIALDDIRLKDGACNQPAYCD 1440


>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 207 YEVSRYYGAIMVEDRFMSRAVSTQQIYCNKHVI*YIKK 94
           Y  + +YG ++ + R+  R+ S  Q+    HVI Y+KK
Sbjct: 16  YHCTTFYG-VLDKKRYEDRSPSNSQLRSLDHVIEYLKK 52


>SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)
          Length = 749

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 207 YEVSRYYGAIMVEDRFMSRAVSTQQIYCNKHVI*YIKK 94
           Y  + +YG ++ + R+  R+ S  Q+    HVI Y+KK
Sbjct: 16  YHCTTFYG-VLDKKRYEDRSPSNSQLRSLDHVIEYLKK 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,982,818
Number of Sequences: 59808
Number of extensions: 327897
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)