Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d22
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    30   1.4  
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    29   2.5  
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    29   2.5  
AF016443-11|AAC24278.2|  350|Caenorhabditis elegans Hypothetical...    28   4.4  
Z74041-7|CAA98518.2|  335|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 177 LLLHNNARPHTARET 221
           LLLH+NARPHTA +T
Sbjct: 210 LLLHDNARPHTALKT 224



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 268 PDLVAPPDYNFFRNLDNFLRDKK 336
           PDL AP DY+ FR+L N L  +K
Sbjct: 243 PDL-APTDYHLFRSLQNHLAGQK 264


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 268 PDLVAPPDYNFFRNLDNFLRDKK 336
           PDL AP DY+ F +L +++RDK+
Sbjct: 271 PDL-APTDYHLFLSLSDYMRDKQ 292


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 268 PDLVAPPDYNFFRNLDNFLRDKK 336
           PDL AP DY+ F +L +++RDK+
Sbjct: 246 PDL-APTDYHLFLSLSDYMRDKQ 267


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 268 PDLVAPPDYNFFRNLDNFLRDKK 336
           PDL AP DY+ F +L +++RDK+
Sbjct: 271 PDL-APTDYHLFLSLSDYMRDKQ 292


>AF016443-11|AAC24278.2|  350|Caenorhabditis elegans Hypothetical
           protein C17E7.10 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 87  EISVCLFSSLCQQAANTFEVNPQTGFDII 1
           E ++C+  SLCQ+     EV P T  D I
Sbjct: 215 EKNLCMSPSLCQKVFGDVEVGPNTNLDSI 243


>Z74041-7|CAA98518.2|  335|Caenorhabditis elegans Hypothetical
           protein T03F7.4 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 260 LFAQTLLLHRTTIFFVIWTIFYVIKSYSNI 349
           LFA  + +   TIFF++ + FY+ KS +++
Sbjct: 202 LFALLIFIFSQTIFFILHSSFYLCKSTTSL 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,111,612
Number of Sequences: 27780
Number of extensions: 259762
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)