Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d22
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    26   0.32 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   3.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   3.9  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   9.1  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 268 PDLVAPPDYNFFRNLDNFLRDK 333
           PDL AP DY  FR+L N L  K
Sbjct: 274 PDL-APSDYFLFRSLQNSLNGK 294



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 186 HNNARPHTARET 221
           H+NARPHT+  T
Sbjct: 244 HDNARPHTSLVT 255


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 186 HNNARPHTARET 221
           H+NARPHT+  T
Sbjct: 122 HDNARPHTSLVT 133


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 296 IFFVIWTIFYVI 331
           +FF+ WT +YV+
Sbjct: 268 VFFICWTPYYVM 279


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 289 DYNFFRNLDNFLRDKKLF*YI*INKVIPI 375
           +YN + N +N+   KKL+  I   + IPI
Sbjct: 93  NYNNYNNNNNYNNYKKLYYNINYIEQIPI 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,832
Number of Sequences: 438
Number of extensions: 3810
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)