Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d18
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q29EQ3 Cluster: PHD finger protein rhinoceros; n=2; pse...    78   2e-13
UniRef50_Q0IFH5 Cluster: Phd finger protein; n=2; Coelomata|Rep:...    77   3e-13
UniRef50_Q7YZH1 Cluster: PHD finger protein rhinoceros; n=2; Dro...    77   3e-13
UniRef50_UPI00015B4B3A Cluster: PREDICTED: similar to phd finger...    75   2e-12
UniRef50_UPI0000DB6CBD Cluster: PREDICTED: similar to rhinoceros...    75   2e-12
UniRef50_UPI0000E4772B Cluster: PREDICTED: hypothetical protein;...    40   0.070
UniRef50_Q6IE91 Cluster: Jade protein; n=1; Ciona intestinalis|R...    39   0.093
UniRef50_Q92613 Cluster: Protein Jade-3; n=23; Euteleostomi|Rep:...    38   0.28 
UniRef50_UPI0000F20FD0 Cluster: PREDICTED: similar to KIAA0239; ...    35   2.0  
UniRef50_Q4QIW0 Cluster: Putative uncharacterized protein; n=2; ...    34   3.5  
UniRef50_Q4S6E3 Cluster: Chromosome 10 SCAF14728, whole genome s...    33   4.6  
UniRef50_UPI00003AF52F Cluster: UPI00003AF52F related cluster; n...    33   6.1  
UniRef50_Q9NQC1 Cluster: Protein Jade-2; n=31; Tetrapoda|Rep: Pr...    33   6.1  
UniRef50_A4Z3B0 Cluster: Putative Exopolysaccharide biosynthesis...    33   8.0  

>UniRef50_Q29EQ3 Cluster: PHD finger protein rhinoceros; n=2;
           pseudoobscura subgroup|Rep: PHD finger protein
           rhinoceros - Drosophila pseudoobscura (Fruit fly)
          Length = 3238

 Score = 78.2 bits (184), Expect = 2e-13
 Identities = 39/68 (57%), Positives = 48/68 (70%)
 Frame = +1

Query: 457 TKRATVTRGEEPSTSKRRRMEPEDPLWQLRPVSDLKMSSIYNRSASEAPAELFRKDLISA 636
           TK  +    +  S SK +        WQ R V+D+KMSSIYNRS++EAPAEL+RKDLISA
Sbjct: 79  TKSKSTKLAKSSSKSKSQGASTSSS-WQARSVADIKMSSIYNRSSTEAPAELYRKDLISA 137

Query: 637 MKLPDNEP 660
           MKLPD+EP
Sbjct: 138 MKLPDSEP 145


>UniRef50_Q0IFH5 Cluster: Phd finger protein; n=2; Coelomata|Rep:
           Phd finger protein - Aedes aegypti (Yellowfever
           mosquito)
          Length = 2274

 Score = 77.4 bits (182), Expect = 3e-13
 Identities = 41/68 (60%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
 Frame = +1

Query: 463 RATVTRGEEPSTSKRRRMEPEDPL--WQLRPVSDLKMSSIYNRSASEAPAELFRKDLISA 636
           R  V+  EE ++       P  P   WQ R V D+KMSSIYNR+A EAPAELFRKDLISA
Sbjct: 26  RPAVSSMEEDNSLTSNTGGPTTPTKNWQPRAVIDIKMSSIYNRTAPEAPAELFRKDLISA 85

Query: 637 MKLPDNEP 660
           MKLPD+EP
Sbjct: 86  MKLPDSEP 93


>UniRef50_Q7YZH1 Cluster: PHD finger protein rhinoceros; n=2;
           Drosophila melanogaster|Rep: PHD finger protein
           rhinoceros - Drosophila melanogaster (Fruit fly)
          Length = 3241

 Score = 77.4 bits (182), Expect = 3e-13
 Identities = 34/42 (80%), Positives = 40/42 (95%)
 Frame = +1

Query: 535 WQLRPVSDLKMSSIYNRSASEAPAELFRKDLISAMKLPDNEP 660
           WQ R V+D+KMSSIYNRS++EAPAEL+RKDLISAMKLPD+EP
Sbjct: 124 WQARSVADIKMSSIYNRSSTEAPAELYRKDLISAMKLPDSEP 165


>UniRef50_UPI00015B4B3A Cluster: PREDICTED: similar to phd finger
           protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to phd finger protein - Nasonia vitripennis
          Length = 3088

 Score = 74.9 bits (176), Expect = 2e-12
 Identities = 33/42 (78%), Positives = 39/42 (92%)
 Frame = +1

Query: 535 WQLRPVSDLKMSSIYNRSASEAPAELFRKDLISAMKLPDNEP 660
           W  RP+SD+K+SSIYNRSA+E PAEL+RKDLISAMKLPD+EP
Sbjct: 62  WTPRPLSDIKISSIYNRSAAEPPAELYRKDLISAMKLPDSEP 103


>UniRef50_UPI0000DB6CBD Cluster: PREDICTED: similar to rhinoceros
           CG7036-PB, isoform B; n=1; Apis mellifera|Rep:
           PREDICTED: similar to rhinoceros CG7036-PB, isoform B -
           Apis mellifera
          Length = 2662

 Score = 74.9 bits (176), Expect = 2e-12
 Identities = 33/42 (78%), Positives = 39/42 (92%)
 Frame = +1

Query: 535 WQLRPVSDLKMSSIYNRSASEAPAELFRKDLISAMKLPDNEP 660
           W  RP+ D+K+SSIYNRS++EAPAELFRKDLISAMKLPD+EP
Sbjct: 61  WTPRPLCDIKISSIYNRSSAEAPAELFRKDLISAMKLPDSEP 102


>UniRef50_UPI0000E4772B Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 1148

 Score = 39.5 bits (88), Expect = 0.070
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +1

Query: 580 NRSASEAPAELFRKDLISAMKLPDN 654
           +  +S  PAE+FRKDLISAMKLPD+
Sbjct: 6   SHGSSNQPAEVFRKDLISAMKLPDS 30


>UniRef50_Q6IE91 Cluster: Jade protein; n=1; Ciona intestinalis|Rep:
           Jade protein - Ciona intestinalis (Transparent sea
           squirt)
          Length = 585

 Score = 39.1 bits (87), Expect = 0.093
 Identities = 24/55 (43%), Positives = 31/55 (56%)
 Frame = +1

Query: 487 EPSTSKRRRMEPEDPLWQLRPVSDLKMSSIYNRSASEAPAELFRKDLISAMKLPD 651
           +PST     M     + +   +S  + S I NR     PAE+FRKDLISAMK+PD
Sbjct: 105 KPSTPSTSNMR--SAIQRSTSLSQKRQSRIPNR---HKPAEIFRKDLISAMKIPD 154


>UniRef50_Q92613 Cluster: Protein Jade-3; n=23; Euteleostomi|Rep:
           Protein Jade-3 - Homo sapiens (Human)
          Length = 823

 Score = 37.5 bits (83), Expect = 0.28
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +1

Query: 601 PAELFRKDLISAMKLPDN 654
           PAE+FRKDLISAMKLPD+
Sbjct: 40  PAEVFRKDLISAMKLPDS 57


>UniRef50_UPI0000F20FD0 Cluster: PREDICTED: similar to KIAA0239;
           n=2; Danio rerio|Rep: PREDICTED: similar to KIAA0239 -
           Danio rerio
          Length = 752

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 568 SSIYNRSASEAPAELFRKDLISAMKLPDN 654
           SS + R   + P+E+FR D I+AMKLPD+
Sbjct: 37  SSTWVRHEQKRPSEVFRTDFITAMKLPDS 65


>UniRef50_Q4QIW0 Cluster: Putative uncharacterized protein; n=2;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 1099

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -3

Query: 635 ALIRSFLNNSAGASEALLLY-IDDILRSLTGRSCQRGSSGSI-LRRLDVLGSSPRVTVAL 462
           AL+  FL  +A A  A L+  +  +L SL  R  +RGS+    L R+  L SSP +TVA 
Sbjct: 207 ALLCDFLQTAAQAGGAPLMQRLAAVLCSLVTRPTKRGSAPDAHLSRMRELPSSPTITVAQ 266

Query: 461 FVPLID 444
              L D
Sbjct: 267 LSDLFD 272


>UniRef50_Q4S6E3 Cluster: Chromosome 10 SCAF14728, whole genome
           shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 10
           SCAF14728, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 852

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +1

Query: 583 RSASEAPAELFRKDLISAMKLPDN 654
           RSA + P+E+FR DLI+AMK+ D+
Sbjct: 31  RSAGQKPSEVFRTDLITAMKVHDS 54


>UniRef50_UPI00003AF52F Cluster: UPI00003AF52F related cluster; n=1;
           Gallus gallus|Rep: UPI00003AF52F UniRef100 entry -
           Gallus gallus
          Length = 116

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -2

Query: 474 HCRPFCASHRHLSH*CPQPTCSRSYYSF-ALRTW*QHRVECHIIHYMMAFQFAFPIHFL* 298
           HC+P    H H  + C + T  R++    A+ +W QH         +  F F F +HFL 
Sbjct: 25  HCKPSACLHNHRLNPCRKNTADRAFPKLRAVPSWLQH---------VCVFPFKFGVHFLC 75

Query: 297 KSFGAI 280
             +G +
Sbjct: 76  TPWGLV 81


>UniRef50_Q9NQC1 Cluster: Protein Jade-2; n=31; Tetrapoda|Rep:
           Protein Jade-2 - Homo sapiens (Human)
          Length = 790

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +1

Query: 583 RSASEAPAELFRKDLISAMKLPDN 654
           R   + P+E+FR DLI+AMK+PD+
Sbjct: 43  RQNEKKPSEVFRTDLITAMKIPDS 66


>UniRef50_A4Z3B0 Cluster: Putative Exopolysaccharide biosynthesis
           protein; n=1; Bradyrhizobium sp. ORS278|Rep: Putative
           Exopolysaccharide biosynthesis protein - Bradyrhizobium
           sp. (strain ORS278)
          Length = 431

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -3

Query: 611 NSAGASEALLLYIDDILRSLTGRSCQRGSSGSI 513
           N AGA   L++ I  ++RSL GR  QRGSSG++
Sbjct: 174 NLAGAFFGLMVIIS-LVRSLAGRRSQRGSSGAV 205


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,964,631
Number of Sequences: 1657284
Number of extensions: 13123061
Number of successful extensions: 31312
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 30420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31305
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)