Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d18
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    31   0.11 
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    28   1.4  
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    26   5.5  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   7.3  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   7.3  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.3  

>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 373 LPRSKCKAVVGS*TCRLWTLVREMSMRGTKRATVTRGEEPSTSKRRRMEPEDPLWQLRPV 552
           LP  K   V     CR+W +   M +        ++  EPS + +  +E   PL++ RPV
Sbjct: 175 LPNGKTTIVNLKGQCRVWIITTNMGVESVPTCRHSKLGEPSKTIQEVIEALKPLFEKRPV 234


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -3

Query: 332 HFSLRSQY---IFCKSHLAPLIQK--PLWSRDYVRITNASQVKWPKRTSSSSNVIGFERN 168
           HFSLRS Y   +   + +A  IQ+   L  ++   +     + W + +S S ++IG E+ 
Sbjct: 63  HFSLRSVYFAWLLRDTSIAEYIQQCSELGIQNLTFLERTDLISWLEGSSDSEHIIGLEKP 122

Query: 167 LP 162
            P
Sbjct: 123 KP 124


>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 37  CNFILSNL-CYLPTISSLLNMCSCLVHSRL 123
           C F+LS L C  P I + +N+CS L  S L
Sbjct: 92  CLFVLSTLYCDSPRIPAEVNVCSVLAVSDL 121


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 451 RGTKRATVTRGEEPSTSKRRRMEPEDPLWQLRPVSDLKMSSIYNRSASE 597
           +GTK+   + GE+ S +KR ++E       L P +D+    I N + ++
Sbjct: 51  QGTKKLESSVGEQESATKRAKIENLKDNQDLIPNNDVNGIHINNSAVAD 99


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/39 (23%), Positives = 24/39 (61%)
 Frame = -3

Query: 299 KSHLAPLIQKPLWSRDYVRITNASQVKWPKRTSSSSNVI 183
           +S +APL +  L +R+ + +++ S ++W     S+ +++
Sbjct: 187 RSPIAPLTEDQLSAREELPLSHFSHIEWNLHLRSNKSIV 225


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 16  TLALCSCCNFILSNLCYLPTISS 84
           TL  CS C    S+L Y  TISS
Sbjct: 107 TLQACSTCTISTSSLSYSGTISS 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,080
Number of Sequences: 5004
Number of extensions: 57132
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)