Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d18
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0847 - 21828372-21828545,21829043-21829206,21829831-218299...    29   2.5  
03_05_0981 - 29391027-29391099,29391227-29391350,29391443-293915...    29   3.3  
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55...    29   4.3  
11_01_0393 + 2961434-2961564,2961862-2961865,2962429-2963970,296...    28   5.7  
06_03_0579 + 22477171-22477359,22477486-22477767,22477774-224779...    28   7.6  
05_01_0612 - 5459667-5459960                                           28   7.6  
01_06_0424 - 29237398-29237730,29238620-29238668,29240099-29240544     28   7.6  

>08_02_0847 -
           21828372-21828545,21829043-21829206,21829831-21829967,
           21830909-21831241,21832067-21833244
          Length = 661

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 332 HFSLRSQYIFCKSHLAPLIQKPLWSRDYVRIT 237
           H +LRS ++   SHLAP +   L+ RD   +T
Sbjct: 44  HAALRSLHLSLSSHLAPFLASHLFHRDAFALT 75


>03_05_0981 -
           29391027-29391099,29391227-29391350,29391443-29391576,
           29391814-29391895,29391955-29392012,29392344-29392418,
           29392518-29392596,29393034-29393110,29393210-29393329
          Length = 273

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 429 CPQPTCSRSYYSFALRTW 376
           C  P+CSR+++S  LR W
Sbjct: 224 CENPSCSRAFHSVCLRDW 241


>08_01_0077 +
           546473-546512,546739-547013,547772-547885,548002-550245
          Length = 890

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 641 FIALIRSFLNNSAGASEALLLYIDDILRSLTGRSC 537
           FI  I S +++  G S  L   ++ +L SLTGR+C
Sbjct: 105 FIWQIESVISDIQGCSLQLCQLVNSLLPSLTGRAC 139


>11_01_0393 +
           2961434-2961564,2961862-2961865,2962429-2963970,
           2964572-2964675,2964791-2964877,2965378-2965414,
           2965729-2965801,2965963-2967494
          Length = 1169

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -1

Query: 334 GISVCVPNTFSVKVIWRH*SKNHCGHVTMYESPTQAK*NGQNAHRVHLMSLVLK 173
           G  + V + F V ++WR     +C ++  YE     + N  N   +  M  VLK
Sbjct: 523 GCDIPVEDKFDV-LVWRSRIPPYCNYIVTYEKRKPRRMNSDNKEDLEKMMSVLK 575


>06_03_0579 +
           22477171-22477359,22477486-22477767,22477774-22477901,
           22478088-22478499
          Length = 336

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -3

Query: 608 SAGASEAL-LLYIDDILRSLTGRSCQRGSSGSILRRLDVLGSSPRVTVALFVPLIDISRT 432
           +AGA E L +++  +++ +L     + G   +  + +D  G+  R+T  + V + + +  
Sbjct: 60  AAGADEPLWIIFAKEMIINL-----KEGMMINSDKTIDRRGAHVRITNGVQVTVQNSNNV 114

Query: 431 NVHNLHVHD 405
            +HN+H+HD
Sbjct: 115 IIHNIHIHD 123


>05_01_0612 - 5459667-5459960
          Length = 97

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 205 HRVHLMSLVLKGTCRITYTWSPDIKFFITESEPNK 101
           H +HL  L+  G   +   W+PD+      SE  K
Sbjct: 24  HNLHLQGLLQLGEAIVPVGWTPDLNCLFKTSEQKK 58


>01_06_0424 - 29237398-29237730,29238620-29238668,29240099-29240544
          Length = 275

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +1

Query: 373 LPRSKCKAVVGS*TCRLWTLVREMSMRGTKRATVTRGEEPSTSKRRRMEPEDPLWQLRP 549
           +PRS+   V+   +C L T       R  +R     G+E      R +  EDP    RP
Sbjct: 14  VPRSELTRVIYGWSCTLHTHTSNHGDRRGRRGDTEAGDEAGGGDDRLLHHEDPQLPHRP 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,971,845
Number of Sequences: 37544
Number of extensions: 376443
Number of successful extensions: 918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)