Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5d18
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_39180| Best HMM Match : Herpes_LP (HMM E-Value=7.7) 30 1.9
SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_44005| Best HMM Match : CUE (HMM E-Value=0.38) 29 4.4
SB_43078| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_130| Best HMM Match : rve (HMM E-Value=0.0043) 29 4.4
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 28 5.9
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 28 5.9
SB_21103| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 28 5.9
SB_28288| Best HMM Match : E-MAP-115 (HMM E-Value=0.076) 28 7.7
SB_27869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -3
Query: 644 NFIALIRSFLNNSAGASEALLLYIDDILRSLTGRSCQRGSSGSILRRLDVLGSSPRVTVA 465
NF+A ++ + E L+ +I +I LT + S +R LD +GS R+T++
Sbjct: 670 NFVAQLKPHCHQFTSGGEQLVNHISNI-GLLTTKIGLLSSLQEYVRVLDKVGSRQRITLS 728
Query: 464 LFVP 453
FVP
Sbjct: 729 DFVP 732
>SB_39180| Best HMM Match : Herpes_LP (HMM E-Value=7.7)
Length = 268
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 439 EMSMRGTKRATVTRGEEPSTSKRRRMEPED 528
E+ + +K AT RGE S++RR PED
Sbjct: 235 EIEVNPSKTATTNRGERRRRSQKRRQVPED 264
>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +1
Query: 427 TLVREMSMRGTKRATVTRG---EEPSTSKRRRMEPEDPLWQLRPVSDLKMSSIYNRSAS 594
T ++ R TK + + G +E ++S R R E + P+WQ R ++S Y+ SAS
Sbjct: 439 TTMQSYDDRATKWSLGSDGSEYDESNSSVRTRPEGKQPVWQNRESLGSEVSGYYSYSAS 497
>SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)
Length = 761
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 493 STSKRRRMEPEDPLWQLRPVSDLKMSSIYNRSASEAPAELFRKD 624
S+ KR+++ PED L + + D K + + + A + E R++
Sbjct: 312 SSGKRKKLTPEDSLRRKQAAQDKKQAKVREKQAKQQAQEKKRQE 355
>SB_43078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 241 IRT*SRDHSGFWINGAK*LLQKM--YWERKLKCHHVVNDVTFYTMLLPRSKCKAVV 402
+R+ S+ G++ + A LLQ + + + + CH T + + P SK KAVV
Sbjct: 20 VRSLSKFRDGYYTSNAMGLLQSLPSFTQMRFFCHKQALGRTLHIITTPDSKGKAVV 75
>SB_130| Best HMM Match : rve (HMM E-Value=0.0043)
Length = 297
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = -3
Query: 638 IALIRSFLNNSAGASEALLLYIDDILRSLTGRSCQRGSS--GSILRRLDVLGSSPRVTVA 465
+ L + + N A+++Y+DDIL +TGR+ S G +L RL V ++T
Sbjct: 89 VGLFQRTIENVLKGLPAVIVYLDDIL--VTGRNDAEHLSNIGGVLTRLQVHSLCLQITKC 146
Query: 464 LFV-PLIDISRTNVHNLHVHDPTTALHLER 378
FV ++ R + + + A +L R
Sbjct: 147 EFVLREVEYKRCKIEYISSKENACADYLSR 176
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = -3
Query: 539 CQRGSSGSILRRLDVLGSSPR 477
C+R SSG+++R+LDV+ S+ +
Sbjct: 386 CERSSSGNVIRKLDVVISTSK 406
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = -3
Query: 635 ALIRSFLNNSAGASEALLLYIDDILRSLTGRSCQRGSS--GSILRRLDVLGSSPRVTVAL 462
A+ +S ++ + ++ YIDDIL +TGR+ Q+ + ++L RL+ G S +++
Sbjct: 1226 AVFQSTIDTILKGIDGVVCYIDDIL--ITGRNNQKHKARFEAVLERLEKYGISLKLSKCS 1283
Query: 461 FV 456
F+
Sbjct: 1284 FL 1285
>SB_21103| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 366
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = -3
Query: 635 ALIRSFLNNSAGASEALLLYIDDILRSLTGRSCQRGSS--GSILRRLDVLGSSPRVTVAL 462
A+ +S ++ + ++ YIDDIL +TGR+ Q+ + ++L RL+ G S +++
Sbjct: 167 AVFQSTIDTILKGIDGVVCYIDDIL--ITGRNNQKHKARFEAVLERLEKYGISLKLSKCS 224
Query: 461 FV 456
F+
Sbjct: 225 FL 226
>SB_28288| Best HMM Match : E-MAP-115 (HMM E-Value=0.076)
Length = 784
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 508 RRMEPEDPLWQLRPVSDLKMSSIYNRSASEAPAELFRKDL 627
R++ D WQL+ SD+K+ S R A A E + ++L
Sbjct: 638 RKVMANDSSWQLKKTSDVKIKSF--READRARREEYEQEL 675
>SB_27869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 508 RRMEPEDPLWQLRPVSDLKMSSIYNRSASEAPAELFRKDL 627
R++ D WQL+ SD+K+ S R A A E + ++L
Sbjct: 193 RKVMANDSSWQLKKTSDVKIKSF--READRARREEYEQEL 230
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,916,499
Number of Sequences: 59808
Number of extensions: 440650
Number of successful extensions: 1041
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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