Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d10
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_41410| Best HMM Match : 7tm_1 (HMM E-Value=0.00049)                 27   4.8  
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              27   6.3  
SB_31573| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_9692| Best HMM Match : DUF1054 (HMM E-Value=3.5)                    27   6.3  
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.3  
SB_56646| Best HMM Match : Phage_GP20 (HMM E-Value=1.7)                26   8.3  
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   8.3  
SB_23872| Best HMM Match : DUF1279 (HMM E-Value=0.77)                  26   8.3  
SB_11146| Best HMM Match : K_tetra (HMM E-Value=1.1e-34)               26   8.3  

>SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 122 TFSGAGPSKTLTSTALALAFPIFQEVF 42
           TFSG  P+     T L+ A PIF+E+F
Sbjct: 255 TFSGNAPTLHAHQTILSAASPIFRELF 281


>SB_41410| Best HMM Match : 7tm_1 (HMM E-Value=0.00049)
          Length = 780

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 118 NVEKP--KLKPCCACPETKRARDACIIEN 198
           NVE+P  ++KPC A  E KR  +  I+ N
Sbjct: 359 NVERPSPRIKPCLAKNEKKRRYETTIVGN 387


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 94   VLEGPAPENVEKPKLKPCCACPETKRARDACIIE 195
            V + P P   E P+ +   +CP+ KR   + ++E
Sbjct: 1184 VPQAPQPNTREAPRRQAVLSCPDDKRPLSSGVVE 1217


>SB_31573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 193 ENGE--ENCGPLIEEHKACMRKMGFNI 267
           ENGE  EN  PL E  KA ++K GF +
Sbjct: 199 ENGEPKENQKPLRERIKAILKKYGFTV 225


>SB_9692| Best HMM Match : DUF1054 (HMM E-Value=3.5)
          Length = 287

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 167 FVSGQAQQGFSLGFSTFSGAGPSKTLTSTALALAFPI 57
           F  G    GF +GFS F        +TS+ +A A  I
Sbjct: 222 FAIGSETSGFKIGFSKFDITFKQNVVTSSNIAAALEI 258


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 148 CACPETKRARDACIIENGEENCGPLIEEHKACMR 249
           CAC  T   R +C  + G+  C P I E + C R
Sbjct: 746 CACNMTGSKRSSCHPDTGKCECHPSITE-RQCSR 778


>SB_56646| Best HMM Match : Phage_GP20 (HMM E-Value=1.7)
          Length = 238

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 193 ENGE-ENCGPLIEEHKACMRKMGFNI 267
           EN E EN  PLIE  KA  +K GF +
Sbjct: 151 ENRELENQKPLIERIKAIFKKYGFTV 176


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 288  NQSIISYKVPTTALLICQQISSNMKK 365
            N +++ Y V  T   +CQ+   N+KK
Sbjct: 1871 NAALVQYLVDGTQFALCQEAKENLKK 1896


>SB_23872| Best HMM Match : DUF1279 (HMM E-Value=0.77)
          Length = 268

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 193 ENGE-ENCGPLIEEHKACMRKMGFNI 267
           EN E EN  PLIE  KA  +K GF +
Sbjct: 151 ENRELENQKPLIERIKAIFKKYGFTV 176


>SB_11146| Best HMM Match : K_tetra (HMM E-Value=1.1e-34)
          Length = 336

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 365 FFHIGTDLLTNKQCCRRYFVAN 300
           FFHI T+ +    CC+ Y+  N
Sbjct: 149 FFHIPTEDILQDTCCQEYYGKN 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,129,463
Number of Sequences: 59808
Number of extensions: 182360
Number of successful extensions: 440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)