Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d09
         (431 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O22794 Cluster: Putative splicing factor U2AF large cha...    35   0.64 
UniRef50_Q247R0 Cluster: Putative uncharacterized protein; n=1; ...    34   1.5  
UniRef50_Q23BX5 Cluster: Putative uncharacterized protein; n=1; ...    34   1.5  
UniRef50_A6T2X5 Cluster: Uncharacterized conserved protein; n=2;...    33   3.4  
UniRef50_UPI00006CCAA2 Cluster: hypothetical protein TTHERM_0028...    32   4.5  
UniRef50_Q4SN85 Cluster: Chromosome 8 SCAF14543, whole genome sh...    32   4.5  
UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein; ...    32   4.5  
UniRef50_Q22NS4 Cluster: Putative uncharacterized protein; n=1; ...    32   4.5  
UniRef50_A6UU05 Cluster: Polysaccharide biosynthesis protein; n=...    32   4.5  
UniRef50_Q2C452 Cluster: Uncharacterized conserved membrane prot...    32   5.9  
UniRef50_A0KH60 Cluster: Sensory box/GGDEF family protein; n=1; ...    32   5.9  
UniRef50_A4BL29 Cluster: Putative RNA helicase; n=1; Nitrococcus...    31   7.8  
UniRef50_A7SHV9 Cluster: Predicted protein; n=1; Nematostella ve...    31   7.8  

>UniRef50_O22794 Cluster: Putative splicing factor U2AF large chain;
           n=2; Arabidopsis thaliana|Rep: Putative splicing factor
           U2AF large chain - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 475

 Score = 35.1 bits (77), Expect = 0.64
 Identities = 25/90 (27%), Positives = 46/90 (51%)
 Frame = +3

Query: 114 KQNRKINISRKHIHKSVFLFLCEINKVWC*LKMNESKSLQADDLDSQSANKSINPKARDP 293
           K+NR+IN+S++H    V     E+++ W   +  + KS Q D  + +  ++S     +D 
Sbjct: 44  KKNREINMSKRHDPGKV--HSVEVSERW--ERREQPKSRQRDLREKRRRSRS-RDHGQDR 98

Query: 294 ILFKMAAKLNGRRPKQKREGPSLKTKAPHN 383
                 ++L G  P+++RE  S K  +P N
Sbjct: 99  QKSASKSELGGYSPRKRREQASTKAASPPN 128


>UniRef50_Q247R0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 132

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = -2

Query: 358 LGPSRFCLGLRPFSFAAILKSIGSLAFGLMLLL 260
           +G S+ C+G   F FA +L+S  SLAFG++  L
Sbjct: 59  VGQSKICIGFCTFLFAFLLESSISLAFGILFFL 91


>UniRef50_Q23BX5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1154

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
 Frame = +3

Query: 114 KQNRKINISRKHIHKSVFLFLCEINKVWC*LKMNESKSLQADD--LDSQSANKSINPKAR 287
           KQN  +N S+++  +++F +L E NK W   K  E K+  ADD   D+    K+  PK +
Sbjct: 284 KQN-DLNQSKQY--QNMFKYL-ENNKKWSFCKQKELKTKFADDNYFDNVPVAKTQQPKKQ 339

Query: 288 DPILFKMAAKLNGRRPKQ-KREGPS 359
                +  A+ N ++PKQ K+EG S
Sbjct: 340 KTNKAQPTAE-NAKKPKQIKKEGAS 363


>UniRef50_A6T2X5 Cluster: Uncharacterized conserved protein; n=2;
           Oxalobacteraceae|Rep: Uncharacterized conserved protein
           - Janthinobacterium sp. (strain Marseille)
           (Minibacterium massiliensis)
          Length = 183

 Score = 32.7 bits (71), Expect = 3.4
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 246 DSQSANKSINPKARDPILFKM-AAKLNGRRPKQKREGPSLKT 368
           ++ ++ K++ P A+ P+  K  AAK +GR+P  KR  P++KT
Sbjct: 143 EAAASKKTVKPAAKKPVAVKKTAAKSSGRKPAGKRP-PAVKT 183


>UniRef50_UPI00006CCAA2 Cluster: hypothetical protein
           TTHERM_00284090; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00284090 - Tetrahymena
           thermophila SB210
          Length = 625

 Score = 32.3 bits (70), Expect = 4.5
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -2

Query: 214 FIFN*HQTLFISHKNRNTLLCMCFLEMFIFL--FCLNRDTSHFDENKTNTEIQTN 56
           F  + H  L   H N  TL  +      I+L   C N D + FD+N  ++ IQ N
Sbjct: 468 FFSHDHYNLLFLHLNERTLKYLIHSPFSIYLHKLCFNLDLNQFDQNDCSSFIQIN 522


>UniRef50_Q4SN85 Cluster: Chromosome 8 SCAF14543, whole genome shotgun
            sequence; n=2; Euteleostomi|Rep: Chromosome 8 SCAF14543,
            whole genome shotgun sequence - Tetraodon nigroviridis
            (Green puffer)
          Length = 2188

 Score = 32.3 bits (70), Expect = 4.5
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 213  NESKSLQADDLDSQSANKSINPKARDPIL 299
            + S+++ ADD D QS NKS+    RDP+L
Sbjct: 990  DSSENITADDDDPQSDNKSLEMSERDPLL 1018


>UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein;
           n=132; Bacteria|Rep: DEAD/DEAH box helicase domain
           protein - Shewanella sp. (strain ANA-3)
          Length = 578

 Score = 32.3 bits (70), Expect = 4.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 260 QQKHQSESKRSDTFQNGREAKWP*TQAETRGPEFEDQGPTQQTQTLNFNKTK 415
           Q+ HQ ESKR    +N      P T  + R P+ +D+ P +     N + ++
Sbjct: 466 QRNHQGESKRPQAAKNAEHKNAPATAEQARSPKPQDKYPQRSKGPANSSNSE 517


>UniRef50_Q22NS4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 766

 Score = 32.3 bits (70), Expect = 4.5
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 237 DDLDSQSANKSINPKARDPILFKMAAKLNGRRPKQKREGPS 359
           +DL S+ A K++  +++ PI  KMA+K N  +  ++ + PS
Sbjct: 130 EDLKSEEAKKTVCRRSKSPISSKMASKRNDYKSDKENQVPS 170


>UniRef50_A6UU05 Cluster: Polysaccharide biosynthesis protein; n=1;
           Methanococcus aeolicus Nankai-3|Rep: Polysaccharide
           biosynthesis protein - Methanococcus aeolicus Nankai-3
          Length = 476

 Score = 32.3 bits (70), Expect = 4.5
 Identities = 25/73 (34%), Positives = 36/73 (49%)
 Frame = -2

Query: 430 FFFKLFSFIKV*SLCLLCGALVFKLGPSRFCLGLRPFSFAAILKSIGSLAFGLMLLLADC 251
           +FFKL S I +    L CG LVF +        L+       L   GSL +G+ML++AD 
Sbjct: 406 YFFKL-SAIDLMLKPLFCGGLVFLISYM-----LKESVDWIFLSIFGSLVYGVMLIVADK 459

Query: 250 ESKSSACRLFDSF 212
           + K     L++ F
Sbjct: 460 QIKKIVFDLYNEF 472


>UniRef50_Q2C452 Cluster: Uncharacterized conserved membrane
           protein; n=2; Vibrionaceae|Rep: Uncharacterized
           conserved membrane protein - Photobacterium sp. SKA34
          Length = 600

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = -2

Query: 286 LAFGLMLLLADCESKSSACRLFDSFIFN*HQTLFISHKNRNTLLCMCFLEMFIFLFCLNR 107
           +A GL L LA   + ++    F S+  N H T+FI       ++    +   I    LN+
Sbjct: 243 IAIGLALKLAMLVAGATRVTHFISYFTNLHNTMFIC-----AIIIGAAIVTIIVALMLNK 297

Query: 106 DTSHFDENKTNTEIQTNWCTAVH 38
             S  + N   +E++ NW  +VH
Sbjct: 298 RLSLSNPNVEVSELRENWQESVH 320


>UniRef50_A0KH60 Cluster: Sensory box/GGDEF family protein; n=1;
           Aeromonas hydrophila subsp. hydrophila ATCC 7966|Rep:
           Sensory box/GGDEF family protein - Aeromonas hydrophila
           subsp. hydrophila (strain ATCC 7966 / NCIB 9240)
          Length = 738

 Score = 31.9 bits (69), Expect = 5.9
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 348 LVSAWVYGHLASRPF*KVSDLLLSD*CFCWLTVNLNRQLVDFSI-HSFSISTKLYLFRTK 172
           L+++++   + SRP+ ++    L    F  + V L+  L DF + +S  IST + L   K
Sbjct: 230 LMASFICLFIRSRPYVRIVVAALVSALFAAVNVALDLSLYDFILFYSICISTSIILIMRK 289

Query: 171 IETH 160
            ETH
Sbjct: 290 KETH 293


>UniRef50_A4BL29 Cluster: Putative RNA helicase; n=1; Nitrococcus
           mobilis Nb-231|Rep: Putative RNA helicase - Nitrococcus
           mobilis Nb-231
          Length = 198

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 262 TKASIRKQEIRYFSKWP-RS*MAVDPSRNERARV 360
           T+ ++R++ IR+F  WP R    +DPSR ER R+
Sbjct: 111 TERAVRREAIRFFG-WPERHEQRLDPSRYERPRI 143


>UniRef50_A7SHV9 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 363

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 163 TLLCMCFLEMFIFLFCLNRDTSHFDENKTNTEIQTNWCTAVHAYVPP 23
           T LC+  L+ + ++ C  R + H  +   N  I T+WC  +  ++ P
Sbjct: 114 TNLCIITLDRYTYVICPLRYSDHMSKRVINRLIVTSWCGPLLFHIIP 160


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,608,236
Number of Sequences: 1657284
Number of extensions: 7326290
Number of successful extensions: 21239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21225
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)