Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d09
         (431 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      25   0.31 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.2  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      21   5.0  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      21   5.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   8.8  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    20   8.8  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 123 CFV*TATRLTSTKTKRILKSKQIGAR 46
           CF   +T LTST  +R L S QIG +
Sbjct: 110 CFSGESTVLTSTGLRRNLSSLQIGEK 135


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 167 KHTFM-YVLSRNVYFSVLFKPRHVSLRRKQ 81
           KHT   Y +++N+Y   ++ P H ++   Q
Sbjct: 299 KHTQQHYQMNQNMYPGEMYNPEHTTVNEAQ 328


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 167 KHTFM-YVLSRNVYFSVLFKPRHVSLRRKQ 81
           KHT   Y +++N+Y   ++ P H ++   Q
Sbjct: 247 KHTQQHYQMNQNMYPGEMYNPEHTTVNEAQ 276


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 167 KHTFM-YVLSRNVYFSVLFKPRHVSLRRKQ 81
           KHT   Y +++N+Y   ++ P H ++   Q
Sbjct: 430 KHTQQHYQMNQNMYPGEMYNPEHTTVNEAQ 459


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 225 FSIHSFSISTK--LYLFRTKIETHFYV 151
           F+I   +I+ K  +YL+R  +ET   V
Sbjct: 383 FAIRQHAITAKFPIYLYRMSVETKLNV 409


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 225 FSIHSFSISTK--LYLFRTKIETHFYV 151
           F+I   +I+ K  +YL+R  +ET   V
Sbjct: 385 FAIRQHAITAKFPIYLYRMSVETKLNV 411


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 37  HALPCTNLFGFQYSFCFRRSETCRGLNK 120
           H      L  F   FC R S   + LNK
Sbjct: 534 HVRAFLGLCNFYRKFCARYSAATQDLNK 561


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 157 LCMCFLEMFIFLFC 116
           L + F++ F+FL C
Sbjct: 390 LILSFVDYFVFLLC 403


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,663
Number of Sequences: 336
Number of extensions: 1989
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)