Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d09
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    29   0.40 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.2  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   2.2  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    26   2.8  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   5.0  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    25   5.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   5.0  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    24   8.7  

>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 336 WVYGHLASRPF*KVSDLLLSD*CFCWLTVNLNR 238
           W+YGH + RPF  V+D L       WL  +L R
Sbjct: 159 WLYGHPSGRPFRSVNDFLHH---LYWLISDLTR 188


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 243 NRQLVDFSIHSFSISTKLYLFRTKIETHFYVCAFSKCLFFCFV 115
           ++ LVD  I S   S  ++     I TH  +C FS     CF+
Sbjct: 23  DKSLVDLLIPSLCCSLAVFPSIPLINTHSNLCLFSNFSHSCFL 65


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 231 QADDLDSQSANKSINPKARDPILFKMAAKLNGRRP 335
           + DDLDS   N +I+    +P L + +  LN   P
Sbjct: 188 ETDDLDSYITNTTIDSSEEEPYLLEHSLILNESAP 222


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 183 INKVWC*LKMNESKSLQADDLDSQSAN--KSINPKA-RDPILFKMAAKLNGRRP 335
           + +++C   MNE KS  A D+ ++  N  K+  P + ++ +L +     +G+ P
Sbjct: 238 LTQIFCIAAMNEPKSASASDVRAEKVNLLKATRPASLKESMLGQYTTSEDGKIP 291


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 429 FFLNCLVLLKFRVCVCCVGPWSSNSGPLVS 340
           F   C  LL    C+CC+  +  +SGP +S
Sbjct: 31  FLRACFALL----CLCCITSYWFSSGPFIS 56


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 183 INKVWC*LKMNESKSLQADDLDSQSANKSINPKARDPILFK 305
           INK    L    +K + AD+ D    + ++NP+  +P +FK
Sbjct: 2   INKKLLFLVFALAKGVLADEEDEYEEDYNMNPELENPGMFK 42


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 261  WLTVNLNRQLVDFSIHSFSISTKLYLFRTKIETHFYV 151
            W TV+    L  FSI S + S +LYL +   ET  ++
Sbjct: 1445 WETVSNKALLSIFSILSITNSQRLYLAKNTEETEVWM 1481


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 390 CVCCVGPWSSNSGPLVSAWV 331
           C+CC+  + +N    + AW+
Sbjct: 488 CLCCILEYDTNDSDTLDAWL 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,458
Number of Sequences: 5004
Number of extensions: 33949
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)