Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d09
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335...    27   4.9  
12_02_0749 - 22758317-22760407                                         27   6.5  
03_02_0290 - 7130304-7130416,7130999-7131804,7132730-7132937,713...    27   6.5  
04_03_1037 - 21901989-21902468,21903308-21903526,21903984-219041...    27   8.6  
03_05_0251 + 22400459-22400606,22401174-22401277                       27   8.6  

>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
            16033714-16033866,16034277-16034702,16035922-16037668,
            16037687-16038183,16038519-16038709,16038786-16038941,
            16040077-16040311,16040416-16040723,16041279-16041439,
            16041852-16041895,16041975-16042067
          Length = 1751

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 210  MNESKSLQADDLDSQSANKSINPKARDP 293
            +N+++S    D++++S+ KSINP +  P
Sbjct: 924  VNKTESQVTGDMNNESSGKSINPSSYQP 951


>12_02_0749 - 22758317-22760407
          Length = 696

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 295 IGSLAFGLMLLLA-DCESKSSACRLFDSFIFN 203
           + S AFG+++  A  C   S  C L DSFI N
Sbjct: 361 LDSTAFGIVMSCALKCLEVSDLCELLDSFIKN 392


>03_02_0290 -
           7130304-7130416,7130999-7131804,7132730-7132937,
           7132983-7133153,7134091-7134187,7134814-7134873
          Length = 484

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 151 MCFLEMFIFLFCLNRDTSH 95
           +CFL M  F+FC  R  SH
Sbjct: 431 LCFLNMLAFVFCAMRYKSH 449


>04_03_1037 -
           21901989-21902468,21903308-21903526,21903984-21904106,
           21904225-21904392
          Length = 329

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 204 LKMNESKSLQADDLDSQSANKSINPKARDPILFKMAAKLNGRRPKQKRE 350
           L  N +   Q  D    +  + ++ K +D    K+ A+++ R PK KR+
Sbjct: 184 LSKNVAFGAQTHDNTKHAKPEKLDEKVQDAKTSKVGAEVSDRSPKHKRD 232


>03_05_0251 + 22400459-22400606,22401174-22401277
          Length = 83

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 306 MAAKLNGRRPKQKREGPSLKTKAPHNRH 389
           +A     RRP +KR GPS    A   RH
Sbjct: 3   LAGSTESRRPTKKRAGPSAIGGAAEQRH 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,249
Number of Sequences: 37544
Number of extensions: 189739
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)