Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d09
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49976| Best HMM Match : SEC-C (HMM E-Value=0.95)                    28   3.8  
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_35802| Best HMM Match : Laminin_EGF (HMM E-Value=0.25)              28   3.8  
SB_28799| Best HMM Match : SEC-C (HMM E-Value=0.95)                    28   3.8  
SB_54397| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                27   5.0  
SB_37873| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)                 27   6.6  
SB_8721| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_49976| Best HMM Match : SEC-C (HMM E-Value=0.95)
          Length = 1037

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 102 VSRFKQNRKINISRKHIHKSVFLFLCEINKVWC*L-KMNESKSLQADDLD 248
           +SR +++R+  +SR +  +++ +  C+I K+   L K  E  SLQ+   D
Sbjct: 631 ISRIEESREAILSRDNTSQNLEVLECDIEKLAASLGKFKEEASLQSKTFD 680


>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 228  LQADDLDSQSANKSINPKARDPILFKMAAKLN 323
            L    +D QS+ ++I+  ++DPILF  + +LN
Sbjct: 1072 LDISSIDIQSSRRAISVISQDPILFTGSLRLN 1103


>SB_35802| Best HMM Match : Laminin_EGF (HMM E-Value=0.25)
          Length = 781

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 102 VSRFKQNRKINISRKHIHKSVFLFLCEINKVWC*L-KMNESKSLQADDLD 248
           +SR +++R+  +SR +  +++ +  C+I K+   L K  E  SLQ+   D
Sbjct: 195 ISRIEESREAILSRDNTSQNLEVLECDIEKLAASLGKFKEEASLQSKTFD 244


>SB_28799| Best HMM Match : SEC-C (HMM E-Value=0.95)
          Length = 710

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 102 VSRFKQNRKINISRKHIHKSVFLFLCEINKVWC*L-KMNESKSLQADDLD 248
           +SR +++R+  +SR +  +++ +  C+I K+   L K  E  SLQ+   D
Sbjct: 642 ISRIEESREAILSRDNTSQNLEVLECDIEKLAASLGKFKEEASLQSKTFD 691


>SB_54397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 102 VSRFKQNRKINISRKHIHKSVFLFLCEINKVWC*L-KMNESKSLQADDLD 248
           +SR +++R+  +SR +  +++ +  C+I K+   L K  E  SLQ+   D
Sbjct: 211 ISRIEESREAILSRDNTSQNLEVLECDIEKLAASLGKFKEEASLQSKTFD 260


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 127 FLFCLNRDTSHFDENKTNTEIQTNWCTAVHAYVP 26
           FLF    D   F E     E + NWC+A+H  VP
Sbjct: 69  FLFSYLLDVPIFRE--LQAERKLNWCSALHTVVP 100


>SB_37873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 249 SQSANKSINPKARDPILFKMAAKLNGRRPKQKR 347
           SQS+ + ++  AR P +F +++ LN RR ++ R
Sbjct: 158 SQSSERRVHFSARSPKVFWISSTLNRRRQRRVR 190


>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
          Length = 791

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 216 ESKSLQADDLDSQSANKSINPKARDPILFKMAAKLNGRRPKQKREGPS 359
           E+ SL ADD  +  ++K  +P+A+  +   +   +  +   +KR  PS
Sbjct: 140 EAASLTADDSTAHKSDKKHDPEAKKQVTITVQPGVKPKPTVKKRSTPS 187


>SB_8721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = -1

Query: 221 RFIHFQLAPNFIYFAQK*KHTFMYVLSRNVYFSVLFKPRHVSLRRKQNE 75
           +F+H  + PN         H  +Y ++ + YF     P H+  +   N+
Sbjct: 12  QFLHLDITPNLTLLVASDNHNNLYTINLDDYFK--HHPEHLHHKSHMND 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,018,734
Number of Sequences: 59808
Number of extensions: 246496
Number of successful extensions: 647
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)