Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5d09
(431 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68303-6|CAD89754.1| 708|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z68303-5|CAA92639.2| 706|Caenorhabditis elegans Hypothetical pr... 29 1.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 1.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 1.4
AF022971-3|AAG23977.1| 474|Caenorhabditis elegans Hypothetical ... 29 1.9
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 27 4.4
AY383563-2|AAQ96594.1| 533|Caenorhabditis elegans excitatory GA... 27 4.4
AY383563-1|AAQ96595.1| 539|Caenorhabditis elegans excitatory GA... 27 4.4
AL032625-5|CAH60795.1| 498|Caenorhabditis elegans Hypothetical ... 27 4.4
AL032625-3|CAB63349.1| 514|Caenorhabditis elegans Hypothetical ... 27 4.4
AF098990-1|AAC67448.3| 539|Caenorhabditis elegans Expulsion def... 27 4.4
Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z68303-6|CAD89754.1| 708|Caenorhabditis elegans Hypothetical
protein ZK809.5b protein.
Length = 708
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 94 FDENKTNTEIQTNWCTAVHAYV 29
FD+N+TN E+ ++C A+H+ V
Sbjct: 467 FDKNETNVELYDDFCRALHSSV 488
>Z68303-5|CAA92639.2| 706|Caenorhabditis elegans Hypothetical
protein ZK809.5a protein.
Length = 706
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 94 FDENKTNTEIQTNWCTAVHAYV 29
FD+N+TN E+ ++C A+H+ V
Sbjct: 465 FDKNETNVELYDDFCRALHSSV 486
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 216 ESKSLQADDLDSQSANKSINPKARDPILFKMAAKLNGRRPKQKREGPSLKTKAP 377
+SKS ++D+ ++ + KS K + K +A+ +PK++ G L+ K P
Sbjct: 12629 DSKSKKSDEPEASTEEKSTTEKPTNDKTSKKSAEKKTVKPKKEVTGKPLEAKKP 12682
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 216 ESKSLQADDLDSQSANKSINPKARDPILFKMAAKLNGRRPKQKREGPSLKTKAP 377
+SKS ++D+ ++ + KS K + K +A+ +PK++ G L+ K P
Sbjct: 12629 DSKSKKSDEPEASTEEKSTTEKPTNDKTSKKSAEKKTVKPKKEVTGKPLEAKKP 12682
>AF022971-3|AAG23977.1| 474|Caenorhabditis elegans Hypothetical
protein C31B8.7 protein.
Length = 474
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 172 NRNTLLCMCFLEMFIFLFCLNRDTSHFDE 86
NRNT +C+ L FLF +R+T + E
Sbjct: 3 NRNTAICLIALCFISFLFMFSRNTCNIQE 31
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical
protein F21C10.7 protein.
Length = 2541
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 251 TVSQQKHQSESKRSDTFQNGREAKW 325
T+SQ+KHQ+E S+ Q G+ +W
Sbjct: 530 TLSQEKHQAEKFISNATQIGKSDEW 554
>AY383563-2|AAQ96594.1| 533|Caenorhabditis elegans excitatory GABA
receptor EXP-1A protein.
Length = 533
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 237 QLVDFSIHSFSISTKLYLFRTKIETHFYVC-AFSKCLFFCFV 115
+L DF+I +++++ + T + YVC FS+ FCF+
Sbjct: 271 RLPDFTIQEAYVTSQMESYATGNYSRLYVCFVFSRSSGFCFL 312
>AY383563-1|AAQ96595.1| 539|Caenorhabditis elegans excitatory GABA
receptor EXP-1B protein.
Length = 539
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 237 QLVDFSIHSFSISTKLYLFRTKIETHFYVC-AFSKCLFFCFV 115
+L DF+I +++++ + T + YVC FS+ FCF+
Sbjct: 277 RLPDFTIQEAYVTSQMESYATGNYSRLYVCFVFSRSSGFCFL 318
>AL032625-5|CAH60795.1| 498|Caenorhabditis elegans Hypothetical
protein Y37H9A.1b protein.
Length = 498
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 275 SESKRSDTFQNGREAKWP*TQAETRGPEFEDQGPTQQTQTL 397
S+S + T QNGR+ Q TR PE+ + T + Q++
Sbjct: 415 SDSNKLATLQNGRQGLISVLQCTTRRPEYFLESFTMRNQSI 455
>AL032625-3|CAB63349.1| 514|Caenorhabditis elegans Hypothetical
protein Y37H9A.1a protein.
Length = 514
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 275 SESKRSDTFQNGREAKWP*TQAETRGPEFEDQGPTQQTQTL 397
S+S + T QNGR+ Q TR PE+ + T + Q++
Sbjct: 431 SDSNKLATLQNGRQGLISVLQCTTRRPEYFLESFTMRNQSI 471
>AF098990-1|AAC67448.3| 539|Caenorhabditis elegans Expulsion
defective (defecation)protein 1 protein.
Length = 539
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 237 QLVDFSIHSFSISTKLYLFRTKIETHFYVC-AFSKCLFFCFV 115
+L DF+I +++++ + T + YVC FS+ FCF+
Sbjct: 277 RLPDFTIQEAYVTSQMESYATGNYSRLYVCFVFSRSSGFCFL 318
>Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 247 IHSQPTKASIRKQEIRYFSKWP 312
+HS K + R+ E++YF KWP
Sbjct: 678 VHSDD-KMTYREDELKYFLKWP 698
>Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 247 IHSQPTKASIRKQEIRYFSKWP 312
+HS K + R+ E++YF KWP
Sbjct: 678 VHSDD-KMTYREDELKYFLKWP 698
>Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical
protein T14D7.2 protein.
Length = 734
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 430 FFFKLFSFIKV*SLCLLCGALVFKLGPSRFCLGLRPFSFAAILKSI 293
FF +F FIK+ L ++ G + L P+ GL + IL+ I
Sbjct: 44 FFIIVFHFIKLCQLQMILGLYLLLLSPAIASAGLEEYDEPFILQFI 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,754,124
Number of Sequences: 27780
Number of extensions: 195033
Number of successful extensions: 579
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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