Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5d08
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13) 150 9e-37
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 31 0.89
SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2) 29 2.7
SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86) 29 2.7
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24) 29 3.6
SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8) 28 6.2
SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37) 28 8.3
SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_32705| Best HMM Match : VWA (HMM E-Value=2e-27) 28 8.3
>SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)
Length = 638
Score = 150 bits (364), Expect = 9e-37
Identities = 79/161 (49%), Positives = 110/161 (68%), Gaps = 5/161 (3%)
Frame = +3
Query: 225 SEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPA 404
SEEDK LQEEL MLV++L V L+ PAL+ L + IR ST+SMTSVPKPLKFLR HY +
Sbjct: 36 SEEDKLLQEELTMLVERLKERNVSLHKPALEALRSQIRASTSSMTSVPKPLKFLRPHYAS 95
Query: 405 LKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYV 584
+K+VY+ D + K+F AD+ISVLAM V+E RECL++ +LG+ ++ WGHEYV
Sbjct: 96 MKEVYQGWPDGENKRFLADIISVLAM-------VSEGRECLQFRMLGSKESLESWGHEYV 148
Query: 585 RQLEGEIAEEWNIE-----NMDSLLPLVRDVITFDMKHSAE 692
R L EI E+ ++ L+ L +++I ++M+H+AE
Sbjct: 149 RHLSEEIRAEYGERLCKEITIEQLVGLAQEIIPYNMQHNAE 189
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +3
Query: 231 EDKRLQEELNMLVDKLLGNEV--DLYFPALQMLSNLIRTSTTSMTSVPKPLKFLRE 392
++KRLQ+ELNM+ +LL E + L +N+I T + ++ K ++ LR+
Sbjct: 114 DNKRLQDELNMVRRRLLEKETENESLLRELNSKNNIISTLKSEKMALQKEIETLRQ 169
>SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)
Length = 771
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 264 LVDKLLGNEVDLYF---PALQMLSNLIRTSTTSMTSVPKPLKFLREH 395
L+ K +G V F PAL+ + NL++ S++ ++ P ++ +EH
Sbjct: 7 LLQKTIGVTVGAQFQTDPALEFVKNLLQVSSSRLSDDPNIIRLAKEH 53
>SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)
Length = 427
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = +3
Query: 438 KTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYVRQLEGEIAEEW 617
++ K CADV ++ G++ ++ +E K+ L+ GD+ E R+LEG +A +
Sbjct: 130 RSHKNCADVYIKISTGIA-SMGTSEYTGLDKF-----LNKTGDY-FERARKLEGRVASDE 182
Query: 618 NIENMDSLLPLVRD 659
+++ +D L +RD
Sbjct: 183 DLKMVDLLRYYMRD 196
>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
Length = 1065
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 598 PSNCLTYSCPQSPTFDNVPRRQYFKHSLFSATSRV 494
PSN LT P SP VP++Q SL++ R+
Sbjct: 900 PSNLLTICTPGSPEKSLVPKQQIRLRSLWTGNERI 934
>SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8)
Length = 498
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Frame = -2
Query: 670 NVITSRTSGNNESMFSIFHSSAISPSNCLTYS---C--PQSPTFDNVPRRQYFKHSLFSA 506
N + +R SG + HS+++S S + S C P + F + ++ HSL +
Sbjct: 126 NALEARISGEGTPISMSNHSASLSSSTASSSSFPPCGVPSNTPFSSSTQKPANAHSLKTM 185
Query: 505 TSRVPLTPIAKTEITSAQNFFVFSSVI 425
TS + + + EI A+ + S+ I
Sbjct: 186 TSLIGTSTLTSGEIAGAEPCTLDSAAI 212
>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
Length = 492
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 237 KRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPL--KFLREHYPALK 410
K E ++ +D LL + V F + +S+++ TS TS K + K + E LK
Sbjct: 291 KAADEHGDITLDDLLDDFVTAIFIGQEQVSSVL-TSVLLETSRHKGIQEKLVEEFNSVLK 349
Query: 411 QVYEKITDEKTKKFCADVI 467
Q + D K+ K+C VI
Sbjct: 350 QDRPTLQDLKSLKYCDLVI 368
>SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1219
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 649 SGNNESMFSIFHSSAISPSNCLTYSCPQSP-TFDNVPRRQYFKHSL 515
SG FS+FHSS + + ++ FD+ RRQ +H+L
Sbjct: 288 SGELHGSFSLFHSSDVWSLGVVLFAMVTGRFPFDDQDRRQLLRHTL 333
>SB_32705| Best HMM Match : VWA (HMM E-Value=2e-27)
Length = 316
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 435 EKTKKFCADVISVLAMGVSGT 497
EK KKF D+++ +G SGT
Sbjct: 275 EKAKKFAKDIVNAFKIGTSGT 295
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,941,208
Number of Sequences: 59808
Number of extensions: 413062
Number of successful extensions: 1089
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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