Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d08
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...   152   2e-37
U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical pr...    32   0.34 
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    31   0.78 
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    31   0.78 
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    31   0.78 
AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine re...    28   5.5  
Z73102-17|CAA97418.2|  375|Caenorhabditis elegans Hypothetical p...    27   9.6  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score =  152 bits (369), Expect = 2e-37
 Identities = 76/161 (47%), Positives = 105/161 (65%), Gaps = 5/161 (3%)
 Frame = +3

Query: 225 SEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPA 404
           SEED++L+E+LN+LV +L   +  LY P+L+ +  LIR STTSMTSVPKPLKF+R HY  
Sbjct: 34  SEEDQKLEEDLNLLVQRLSEPDTTLYKPSLETMRTLIRASTTSMTSVPKPLKFMRPHYNK 93

Query: 405 LKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYV 584
           +K+++  I     KK CAD+ISVLAM         E+ + + Y +LG+   +GDWGHEYV
Sbjct: 94  MKEIFTSIVAPDVKKLCADIISVLAMTSD------ERTDTINYRILGSHEPIGDWGHEYV 147

Query: 585 RQLEGEIAEEWNIENMD-----SLLPLVRDVITFDMKHSAE 692
           R L  E++EEW  E         LL L +D+++  MKH+AE
Sbjct: 148 RHLAMEMSEEWKKEGTSDARKAELLKLTQDIVSHHMKHNAE 188


>U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical
           protein B0495.8a protein.
          Length = 313

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +3

Query: 393 HYPALKQVYEKITDEKTKKFCADVISVLAMGVS-GTLEVAEKRECLKYCLLGTLSNVGDW 569
           H PA K  YE+   EK   +  D   ++   V    +E+A+ RE L+  +    S   D 
Sbjct: 62  HEPAHKADYERAQKEKDHFYDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTSQAADS 121

Query: 570 GHEYVRQLEGEIAEEWNIENMDSL 641
             + V ++E +IA+  N+++++ L
Sbjct: 122 KAKQVAEIEEKIAK--NVDDIEKL 143


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 231 EDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPA 404
           E+ RL+ E+N L DK   L NE +     ++     IR S     ++ K L  LRE Y  
Sbjct: 677 ENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLREKYDR 736

Query: 405 LKQVYEKITDE 437
           +    EKI  E
Sbjct: 737 VHTDNEKILGE 747


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 231 EDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPA 404
           E+ RL+ E+N L DK   L NE +     ++     IR S     ++ K L  LRE Y  
Sbjct: 750 ENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLREKYDR 809

Query: 405 LKQVYEKITDE 437
           +    EKI  E
Sbjct: 810 VHTDNEKILGE 820


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 231 EDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPA 404
           E+ RL+ E+N L DK   L NE +     ++     IR S     ++ K L  LRE Y  
Sbjct: 750 ENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLREKYDR 809

Query: 405 LKQVYEKITDE 437
           +    EKI  E
Sbjct: 810 VHTDNEKILGE 820


>AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein4 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 132 VPLFNCSRKASVTYYLLIFCGPKKMSASSATSEEDKRLQE 251
           VPL   S   S  +Y++IF    K + +S+T EE K  +E
Sbjct: 180 VPLNALSSVVSAFFYVMIFWTVHKSTPNSSTGEEQKLRRE 219


>Z73102-17|CAA97418.2|  375|Caenorhabditis elegans Hypothetical
           protein B0035.16 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 492 GTLEVAEKRECLKYCLLGTLSNVGDWGHEYVRQLEGEI 605
           G  EVA+K E +  C +G      D+  EY+    G I
Sbjct: 191 GFQEVAKKPESMGICFIGKKKRFSDFLDEYIEPKPGRI 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,933,827
Number of Sequences: 27780
Number of extensions: 330462
Number of successful extensions: 1125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)