Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5d06
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 48 2e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.003
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 37 0.003
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.006
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.014
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.056
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 32 0.074
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 32 0.074
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.074
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 32 0.098
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.13
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.30
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.69
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.69
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 27 2.8
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 3.7
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 6.4
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ... 26 6.4
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.5
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 8.5
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +3
Query: 117 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTF 296
+T++FVG +P + ED+ F+ +G + +C +MN GFV ++ A + F
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEF 62
Query: 297 NGGVISVE 320
G I VE
Sbjct: 63 MGSRIVVE 70
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Frame = +3
Query: 117 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN-------RCGFVHMQTEEQAAAAIR 275
+ +V+VG+L + +L++ + G V C+I+N C + T E+A AI+
Sbjct: 65 ERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIK 124
Query: 276 ALHNSTFNGGVISV 317
L N F G ++ +
Sbjct: 125 TLSNQKFMGRLVYI 138
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVVTECDI-------MNRCGFVHMQTEEQAAAAIRALH 284
++VG+LP + +L LF G V I G V + E AA++I L+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 285 NSTFNG 302
+ G
Sbjct: 342 GYRYGG 347
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 36.7 bits (81), Expect = 0.003
Identities = 31/127 (24%), Positives = 40/127 (31%), Gaps = 3/127 (2%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 299
VFVG L + E+L+ LF+ FG + I CGFV + A AI L
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLG 364
Query: 300 GGVISVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRHAPPPRD-APYMRDRPGPVR 476
I + P PP +PY P P+
Sbjct: 365 NSRIRLSWGRNQNPIAAPALNYQSQVSQTTIPATSLFPAMSLPPQAQFSPYPAVAPSPLA 424
Query: 477 GYERGPP 497
RG P
Sbjct: 425 LQTRGAP 431
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Frame = +3
Query: 117 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN---------RCGFVHMQTEEQAAAA 269
+ +++VG L + DL F RFG V+ +I+N R +++ +T+E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQK 63
Query: 270 IRA-LHNSTFNGGVISVE 320
++ L N+TF G + +E
Sbjct: 64 CKSYLSNATFKGSKLRIE 81
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.7 bits (76), Expect = 0.014
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Frame = +3
Query: 117 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR-------------CGFVHMQTEEQ 257
+ ++VG+LP + DL +LFE FG ++ +++R F+ + +
Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78
Query: 258 AAAAIRALHNSTFNGGVISVE 320
A AI +L+ S+F G + VE
Sbjct: 79 ADNAIASLNGSSFQGNTLKVE 99
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 32.7 bits (71), Expect = 0.056
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 299
VF+G+LP G +++R+ E FG + + I+ FVH AAAI+A+ N
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFL---NIAAAIKAVQELPLN 264
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 32.3 bits (70), Expect = 0.074
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +3
Query: 120 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 299
T V+V LP+ ++LR F FG + + N G + A AI ++N +
Sbjct: 176 TAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLH 235
Query: 300 G 302
G
Sbjct: 236 G 236
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 32.3 bits (70), Expect = 0.074
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 123 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 218
K+F+G L + + LR FE+FG V +C +M
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 195
Score = 29.5 bits (63), Expect = 0.52
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 123 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 218
K+FVG +P E+ R F +FG V + +M
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.074
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--CGFVHMQTEEQAAAAIRAL 281
VF+G+LP +++ + F +FG + I+++ FVH A +R L
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTL 354
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.9 bits (69), Expect = 0.098
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 105 IMVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN---RCGFVHMQTEEQAAAAIR 275
I V +F+G + + + LR +FERFG V I+N R GF+ M + A A
Sbjct: 401 IKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSL-ILNHNYRHGFLKMFRRDAAEKAQV 459
Query: 276 ALHNSTF 296
A+ N F
Sbjct: 460 AMENVPF 466
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 31.5 bits (68), Expect = 0.13
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Frame = +3
Query: 96 KSVIMVPQTKVFVGSLPQG-SKPEDLRKLFERFGVVTECDIMNR-----CG--FVHMQTE 251
K++ + ++ + +LP KP+ L F +FG V E I + CG FV M+
Sbjct: 99 KTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDR 158
Query: 252 EQAAAAIRALHNSTFNGGVISVE 320
+ A A+ +L+ + +G I+V+
Sbjct: 159 KAAEEAMNSLNGTEIDGRPIAVD 181
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.3 bits (65), Expect = 0.30
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 114 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 218
P+ +FV L ++ EDL +F RFG + C ++
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVI 276
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.1 bits (62), Expect = 0.69
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 120 TKVFVGSLPQGS-KPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTF 296
+++F+G L S +L K+F+ +G + + + GFV T E A A+ A +
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422
Query: 297 NGGVISVE 320
G + +E
Sbjct: 423 RGQKLHLE 430
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.1 bits (62), Expect = 0.69
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 123 KVFVGSLPQGSKPEDLRKLFERFGVVTECDI 215
+VFVG L +K ++R LFE G V + I
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/65 (20%), Positives = 28/65 (43%)
Frame = -3
Query: 285 YEARESPLPLVPLFAYARTRTGSLYHTL*RRRNAQTAFLGPPVWSPAAGCRRTPSFAAP* 106
YE ++ + + +R R G + + + +N A +G + + P F+ P
Sbjct: 285 YEVQQVGIMYPDMTEVSRLRAGQVGYIIWNMKNIDEAIVGDTYSTIGSNVEALPGFSIPQ 344
Query: 105 SQIYI 91
S +Y+
Sbjct: 345 SMVYV 349
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRALH 284
VF+ +L + L F FG + C + GFVH + E A AAI ++
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 285 NSTFN 299
N
Sbjct: 230 GMLLN 234
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 585 VRKRP*GRDPSARTHAGPRRTHSAHHRAPPAD 490
+RKR RDP+ + A PR+T ++ + A D
Sbjct: 967 IRKRAMKRDPAKPSSAQPRKTFASAYEAAVYD 998
>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 446 IHEGPARSGARLRTRSAGGAL**ALCVRRGPAWVRADG 559
I++ P +SG R+ AG L LC + G + DG
Sbjct: 163 IYQHPVQSGMRVLELGAGTGLVSILCAKMGSIVLATDG 200
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVV 200
+FVG+LP+ S E L+ F+R G V
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQV 118
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 429 GARVARGRLRDAPCHRAWNLVH 364
G RV +RDA C+ W+ H
Sbjct: 421 GTRVTGQSIRDASCYFVWSFYH 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,584
Number of Sequences: 5004
Number of extensions: 43467
Number of successful extensions: 136
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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