Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5d06
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 47 2e-05
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 43 3e-04
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 42 4e-04
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.060
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.079
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 34 0.14
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 34 0.14
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 33 0.24
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 33 0.24
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 33 0.32
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.97
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 31 1.3
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 30 1.7
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 30 1.7
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 30 1.7
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_43197| Best HMM Match : HTH_psq (HMM E-Value=6.9) 30 2.3
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 29 3.0
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 29 3.9
SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035) 29 3.9
SB_7620| Best HMM Match : Remorin_N (HMM E-Value=5.2) 29 3.9
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 29 3.9
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_26602| Best HMM Match : SNF (HMM E-Value=0) 29 5.2
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 28 6.9
SB_52772| Best HMM Match : rve (HMM E-Value=0.001) 28 6.9
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032) 28 6.9
SB_59335| Best HMM Match : rve (HMM E-Value=0.0065) 28 9.1
SB_52226| Best HMM Match : Cytadhesin_P30 (HMM E-Value=9) 28 9.1
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 28 9.1
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0) 28 9.1
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016) 28 9.1
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 28 9.1
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 46.8 bits (106), Expect = 2e-05
Identities = 56/215 (26%), Positives = 77/215 (35%), Gaps = 19/215 (8%)
Frame = +3
Query: 123 KVFVGSLPQGS-KPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 299
++F+G+L +DL ++F R G V C + GFV +TE+ A A+ H N
Sbjct: 47 RIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHANFGFVQFETEKGADEAVAKEHGRIIN 106
Query: 300 GGVISVE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRHAPPPRDA-------PYM 452
G I V P RH PP R
Sbjct: 107 GKKIDVRIVNSRADVNLVGERKRRSGPPDRHTPPDRNGPPDRHGPPDRHGMDHGRGRGRG 166
Query: 453 RDRPGPVRGYERGPPAAPYDE---RYAYGEDRRGFALMDRGPRDXXXXXXXXXXD----- 608
RDR P +RG P YD+ R+ + +R G L D D
Sbjct: 167 RDRLSPPPHRDRGRPG--YDDRPPRFDHPHERYGRPLSPPRRGDPYLDHYDRPLDPYPPR 224
Query: 609 ERYQNHISVVEGTRRYDEPPYDDRHYDERAQ-YER 710
ERY++ + R+D PP D + ER YER
Sbjct: 225 ERYRDEPPPRDAYGRHDLPPPRDPYDRERRDPYER 259
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 120 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 299
T++FVG L + +K DL +F +G + CD+ GF+ + A A+R +N
Sbjct: 6 TQLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTAYGFIEYEDPRDAEEAMRRENNRKLF 65
Query: 300 GGVISVE 320
G I VE
Sbjct: 66 GSRIVVE 72
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 123 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG------FVHMQTEEQAAAAIRALH 284
+V+VG+LPQ + +DL +F ++G + + D+ NR G FV + A A++
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRD 321
Query: 285 NSTFNGGVISVE 320
F+G I VE
Sbjct: 322 GHEFDGYRIRVE 333
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +3
Query: 123 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNG 302
+V++G LP G+ +D+R+ F +G + + ++ N GFV + + A A+ + G
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFVEFEDDRDADDAVYECNGKEMLG 63
Query: 303 GVISVE 320
I VE
Sbjct: 64 ERILVE 69
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVVT--ECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 299
+FV LPQ + P L KLF +G +T E + GFV+M E+A AI L+ + +
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFVNMSNYEEACHAICCLNGTPQH 333
Query: 300 G 302
G
Sbjct: 334 G 334
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = +3
Query: 117 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECD-IMNRC-------GFVHMQTEEQAAAAI 272
+T + + +P ED++K+F G VT C I +R FV+ + A A+
Sbjct: 26 RTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAV 85
Query: 273 RALHNSTFNGGVISV 317
R ++ + + V
Sbjct: 86 REMNGARLQNKTLKV 100
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 36.3 bits (80), Expect = 0.026
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-NRC------GFVHMQTEEQAAAAIRALH 284
+FV +LP +K ++ +LF + GVV + ++ NR G+V + E A+ A+ L
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 285 NSTFNGGVISV 317
+ G ISV
Sbjct: 233 KTEVKGRTISV 243
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 35.1 bits (77), Expect = 0.060
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVVTECDI 215
+FVG+L G +DLR FE+FGVV + DI
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDI 268
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 34.7 bits (76), Expect = 0.079
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIRAL 281
++V ++P+ + RK FE +G + C ++ CGFV + +A AAI +L
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSL 194
Query: 282 HNSTFNGGVISVE 320
+ F G + ++
Sbjct: 195 SGTFFPGSTMGLQ 207
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Frame = +3
Query: 117 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAI 272
+T + V +PQ + R +FE + C I+ GFV T E A AI
Sbjct: 46 KTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAI 105
Query: 273 RALHNSTFNGGVISV 317
L+ T V+ V
Sbjct: 106 DKLNGFTIGNKVLKV 120
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +3
Query: 114 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCG---FVHMQTEEQAAAA 269
P ++V ++ + E + LF + G+V + DIM +C FV M T+E+A A
Sbjct: 273 PGCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNA 332
Query: 270 IRALH 284
I+ L+
Sbjct: 333 IQTLN 337
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +3
Query: 120 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDI-MNRCGFVHMQTEE--QAAAAIRALHNS 290
TK++VG+L + + +L + FE+FG +++ + N GF ++ E+ A A+R L +
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGA 63
Query: 291 TFNGGVISVE 320
I VE
Sbjct: 64 NVCDRTIRVE 73
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +3
Query: 120 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIR 275
TK+FVG +P S + LRK F +FG + E ++ GFV M T + A A +
Sbjct: 10 TKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACK 69
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 33.5 bits (73), Expect = 0.18
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +3
Query: 123 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 278
K+++G+L S ++ + FE FG V + DI+ GFV +Q+ +Q A AI
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEK 68
Query: 279 LHNSTFNGGVISV 317
++ S+ G I+V
Sbjct: 69 MNQSSVGGRNITV 81
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 123 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 218
K+FVG + + +K EDLR +F FG + E ++
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVL 246
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 123 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 218
K+FVG +P+ + +DLR +FE +G + E I+
Sbjct: 171 KLFVGQVPRTWEEKDLRPIFEPYGQIYELTIL 202
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 33.1 bits (72), Expect = 0.24
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 123 KVFVGSLPQGSKPEDLRKLFERFGVVTE 206
+VF+G+LP G K D+ ++F ++G + E
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTILE 385
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 117 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 218
++ V+VG+LP DL K+FER+G V + I+
Sbjct: 9 KSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTIL 42
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 108 MVPQTK-VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALH 284
MV TK +F+G L + ED++K F +FG V+ C + +++ AA + ++H
Sbjct: 178 MVTTTKKIFIGGLSTNTSEEDMKKYFSQFGKVS-------CEYETEDVKDELAAVLISVH 230
Query: 285 NS 290
++
Sbjct: 231 SN 232
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 96 KSVIMVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTE 206
K + VP+ K+FVG LP+ + + L + F +FG VT+
Sbjct: 192 KEELNVPK-KLFVGRLPESTTEKTLMEYFAQFGEVTD 227
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 31.1 bits (67), Expect = 0.97
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +3
Query: 108 MVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHN 287
M T+V+ G LP+ + DL K +G V E + GFV A + L+
Sbjct: 1 MSRSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKLGYGFVEFDDYRDADDCVYDLNG 60
Query: 288 STFNG 302
G
Sbjct: 61 RNLLG 65
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM 218
VFVG L G+ E L+ FE+FG V IM
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIM 112
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 615 SVRQGKQAPA-VRKRP*GRDPSARTHAGPRRTHSAHHRAPPADRVRSRAPDLAGPS 451
S RQ Q+P V+ P R S H PRR +RA + R +SR+P+ A S
Sbjct: 370 SQRQRSQSPQRVQASPRRRSQSP-DHVSPRRKSQTPNRASTSTRQQSRSPNRASTS 424
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 411 PVRHAPPPRDAPYMRDRPGPVRGYERGPPAAPYDERYAYGEDRRGFALMDRGPR 572
P H PP R + R P R + GPP P+ +R + + R DRGPR
Sbjct: 282 PDMHGPPDRGR-HDRGPPHDHRDFH-GPPDGPHGQRMQHHDIRGPDPRGDRGPR 333
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 108 MVPQTK-VFVGSLPQGSKPEDLRKLFERFGVVTECDIM 218
MV +T+ ++VG+LP+ + ED+ K F R+G V I+
Sbjct: 1 MVRETRHLWVGNLPENIREEDIVKHFTRYGRVESVKIL 38
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG 230
+FVG++ + + DL++ FER+G V + DI + G
Sbjct: 251 LFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPG 285
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 105 IMVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 218
I P +FV L + EDL +F RFG + C+++
Sbjct: 115 IKPPDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVI 152
>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 495 ADRVRSRAPDLAGPSCMVRPEAGARVAR-GRLR 400
ADRVRSR P GP + P+ GAR R GRLR
Sbjct: 508 ADRVRSRHPPRQGPGVIDVPQ-GARGGRGGRLR 539
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 120 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGF 233
T V+VG+LP K +L+++F ++G + E + G+
Sbjct: 615 TTVYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGY 652
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 123 KVFVGSLPQGSKPEDLRKLFERFGVV 200
KVF+G L G+ EDL++ F +G+V
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMV 228
>SB_43197| Best HMM Match : HTH_psq (HMM E-Value=6.9)
Length = 204
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 672 HREAHRNVAYPPPLRCDSGSV-RQGKQAPAVRKRP*GRDPSARTHAGPRRTHSAHHRAPP 496
H++ R+ A PPP + + V ++ K+APAV ++P P R H+ HH+ P
Sbjct: 52 HKKVCRDPAPPPPPKGEKYFVLKKPKEAPAVLRKP------------PTRPHTTHHKPRP 99
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 29.5 bits (63), Expect = 3.0
Identities = 31/106 (29%), Positives = 38/106 (35%), Gaps = 3/106 (2%)
Frame = +3
Query: 411 PVRHAPPPRDAPYMRDRPGPVRGYE---RGPPAAPYDERYAYGEDRRGFALMDRGPRDXX 581
P + P D GP RG++ RGPP D G+ G+ RG
Sbjct: 769 PYDNRGKPGDVRRRSPPSGPSRGFQDRDRGPPGRGRDAPPGRGQ---GYTNRGRGQPGNR 825
Query: 582 XXXXXXXXDERYQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRP 719
D R + S GTR PYDDR D R + P P
Sbjct: 826 YRDQGAPWDRRPERDNSRDRGTR-----PYDDR--DRRPRDASPPP 864
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Frame = +3
Query: 126 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIRAL 281
+++G +P G +++K FE+FG V + FV +E A A +
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTM 159
Query: 282 HNSTFNGGVI 311
HN G ++
Sbjct: 160 HNYMMFGRLL 169
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -3
Query: 492 DRVRSRAPDLAGPSCMVRPEAGARVARGRLRDAPCHRAWNLVHRDRPHAARV 337
D R+ P + +C+VR +GAR+ G CHR +H +RP + ++
Sbjct: 673 DDCRTSGPLVTDGNCLVRTISGARIISG----LSCHRP---IHHNRPFSKKL 717
>SB_36619| Best HMM Match : SMC_hinge (HMM E-Value=0.0035)
Length = 582
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 510 HRAPPADRVRSRAPDLAGPSCMV 442
+RAPP R + P+++GP CM+
Sbjct: 18 YRAPPRGRRDLKVPEVSGPYCMI 40
>SB_7620| Best HMM Match : Remorin_N (HMM E-Value=5.2)
Length = 330
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 435 RDAPYMRDRPGPVRG--YERGPPAAPYDERYAYGEDRR 542
RDAPY R RPG +G + G P E A G D +
Sbjct: 274 RDAPYPRFRPGTAKGVSWRSGTRHTPRRESVALGLDSK 311
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Frame = +3
Query: 108 MVPQTKVFVGSLPQGSKPEDLRKLFERFG------VVTECDIMNRC---GFVHMQTEEQA 260
++ +T +FV +LP + + FE G +V + D NRC G+V EE A
Sbjct: 16 VISKTTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDA 75
Query: 261 AAA 269
A
Sbjct: 76 LKA 78
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +1
Query: 283 ITRHLTAASYPWSAVASKNAGSVGAVAVDEVPCAVAWSVAEAAPCDTRPRLGTHHT*GTG 462
+ ++ A SAVA +N + V ++EVP V E+ D T GTG
Sbjct: 347 LEEYVAATEPSQSAVAEENKDTQNDVPIEEVPTIVEPEPVESEAKDEDKEKAPEATEGTG 406
Query: 463 QVRCAA 480
Q A+
Sbjct: 407 QAVSAS 412
>SB_26602| Best HMM Match : SNF (HMM E-Value=0)
Length = 721
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 435 RDAPYMRDRPGPVRGYERGPPAAPYDERYAY 527
R P D PV GY RG P +P+D+R Y
Sbjct: 51 RGKPSPFDDRAPVLGYHRGKP-SPFDDRAPY 80
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = +3
Query: 117 QTKVFVGSLPQGSKPEDLRKLFERFGVV--------TECDIMNRCGFVHMQTEEQAAAAI 272
Q VF+G+LP + E LR+LF G V + I G+V ++++ A+
Sbjct: 55 QRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFAL 114
Query: 273 RALHNSTFNGGVISV 317
+ ++N+ F G I V
Sbjct: 115 K-MNNAEFKGRKIRV 128
>SB_52772| Best HMM Match : rve (HMM E-Value=0.001)
Length = 646
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = -3
Query: 555 SARTHAGPRRTHSAHHRAPP------ADRVRSRAPDLAGPSCMVRPEAGARVARGRLRDA 394
+A T + R HH+ P A+R+RS P P R EAG R+A+
Sbjct: 54 TAGTASADTRCQHEHHQEPARTPSALAERIRSPEPPATRPKHPGRVEAGRRLAK------ 107
Query: 393 PCHRAWNLVHRDRPHAARVL 334
WN ++R + RV+
Sbjct: 108 -----WNRINRAKKETLRVV 122
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = -3
Query: 693 ARRSGGRHR--EAHRNVAYPPPLRCDSGSVR-QGKQAPAVRKRP*GRDPSARTHAGPRRT 523
A RS +H E+ + PP + S S R Q +++P R+R P R +
Sbjct: 785 ANRSYRKHNSSESESDSDSPPERKKGSVSPRDQRRRSPMRRRRSRDASPRRRRRSASGSD 844
Query: 522 HSAHHRA-PPADRVRSRAPD 466
S H R+ P DR R R+P+
Sbjct: 845 SSPHRRSESPRDR-RRRSPE 863
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Frame = -3
Query: 609 RQGKQAPAVRKRP*GRDPSARTHAGPRRTHSAHHR--APPADRVRSRAPDLAGPSCMVRP 436
R+ +P R RP PS R RR R +PP R R+P + P R
Sbjct: 1056 RRPSSSPPRRSRPQRTSPSPRRTPEDRRRSRGSRRSPSPPKREPRRRSPSASPPRREARK 1115
Query: 435 EAGARVARGRLR 400
+ +R + +R
Sbjct: 1116 RSLSRSPKREVR 1127
>SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032)
Length = 619
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = -2
Query: 193 PKRSNSFLRSSGLEPCGRLPTNTFVCGTMITDLYHFQEIMSINCY 59
P RSN LRS L C + F+ G +IT L F I SI Y
Sbjct: 452 PFRSNKVLRSLALNSCSN-RSQHFI-GDIITKLVRFSMITSILVY 494
>SB_59335| Best HMM Match : rve (HMM E-Value=0.0065)
Length = 1020
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -3
Query: 495 ADRVRSRAPDLAGPSCMVRPEAGARVARGRLRDAPCHRAWNLVHRDRPHAARVL 334
A+R+ S P P R EAG R+A+ WNL++R + A RVL
Sbjct: 563 AERITSPEPPATRPKHPGRVEAGRRLAK-----------WNLINRAKKEALRVL 605
>SB_52226| Best HMM Match : Cytadhesin_P30 (HMM E-Value=9)
Length = 264
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 429 PPRDAPYMRDRPGPVRGYERGPP-AAPYDERYAYGEDRRG 545
PP + P R PG +GY++ P D+ Y Y R G
Sbjct: 180 PPTNNPMFRPFPGNPQGYQQPTTNQLPTDQAYRYRRPRGG 219
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/60 (23%), Positives = 24/60 (40%)
Frame = +3
Query: 141 LPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGGVISVE 320
LP+ + D+ K +G + + + GFV A A+ L+ G + VE
Sbjct: 696 LPRDVRESDVEKFLRGYGKIRDISLKRGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVE 755
>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
Length = 1243
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/77 (22%), Positives = 31/77 (40%)
Frame = +3
Query: 441 APYMRDRPGPVRGYERGPPAAPYDERYAYGEDRRGFALMDRGPRDXXXXXXXXXXDERYQ 620
AP RD+ P+ G G P+ ++ R +A +++ P R +
Sbjct: 720 APQSRDQAMPLYGGPSGSPSPRFEGPQMQSLSREAYAAINKNP---VSALNEYAQKNRME 776
Query: 621 NHISVVEGTRRYDEPPY 671
VV+ R ++ PP+
Sbjct: 777 VAFEVVKDGRNFNRPPF 793
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 129 FVGSLPQGSKPEDLRKLFERFGVVTECDIMNR 224
FV + G+ PE+LRK+ E G+ T + M++
Sbjct: 1539 FVATYTSGTTPEELRKISENAGIKTFTNKMDQ 1570
>SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
Length = 413
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 272 NRRCRLFLCLHMHEPAPVHYITLCDDAETLKQLS*VLRFGAL 147
N RC+L+ HMH H + C D ++L+ +L+F +
Sbjct: 90 NSRCKLWPRPHMHTKYRAHVV--CGDEARYEELAAILKFNKI 129
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 27.9 bits (59), Expect = 9.1
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Frame = +3
Query: 426 PPPRDAPYMRDRPGPVRG-YERGPPAAPYDERYAYG-EDRRGFALMDRGPRDXXXXXXXX 599
PPP PY + P + ++RG P P DE Y +DR + D R
Sbjct: 1002 PPP---PYWDEHGRPPKDEWDRGYP--PRDEWYQRPPDDREPYGRYDDYYRSERKAWPPR 1056
Query: 600 XX--DERYQNH--ISVVEGTRRYDEPPYDDRHYDERAQYER 710
DERY+ S RYD PPYD R + R
Sbjct: 1057 DEWEDERYRERRPYSPRAERERYDWPPYDRERSPGRERRSR 1097
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,295,909
Number of Sequences: 59808
Number of extensions: 421425
Number of successful extensions: 1706
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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