Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d06
         (737 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical prote...    25   2.4  
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          23   7.4  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   7.4  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   9.8  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   9.8  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    23   9.8  

>AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical protein
           protein.
          Length = 226

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 675 RHREAHRNVAYPPPLRCDS 619
           RH+    +  Y PPL CDS
Sbjct: 33  RHKNLEGSAMYVPPLYCDS 51


>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 669 REAHRNVAYPPPLRCDSGS 613
           R  H+++AYP P R  +G+
Sbjct: 789 RHQHQSLAYPRPARSTTGA 807


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 476 AHRTWPVPHVWCVPRRGRV 420
           AHR  P  H W   +RG V
Sbjct: 900 AHRLIPEVHSWMAQKRGEV 918


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 353  GRSRWTRFHARWH 391
            G  + TRFHA WH
Sbjct: 2130 GTVQATRFHASWH 2142


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 353  GRSRWTRFHARWH 391
            G  + TRFHA WH
Sbjct: 2131 GTVQATRFHASWH 2143


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 22/87 (25%), Positives = 33/87 (37%)
 Frame = +2

Query: 233  RAYANRGTSGSGDSRAS*LDI*RRRHIRGARSHQRTRAAWGRSRWTRFHARWHXXXXXXX 412
            RA +  G+     SR+      R    +G+RS  R+ +   RSR +R  +R         
Sbjct: 1086 RAGSRAGSGSRSRSRSRSRSRSRSGSAKGSRSRSRSGSGGSRSR-SRSRSRSQSAGSRKS 1144

Query: 413  XXXXXXXXXXXIHEGPARSGARLRTRS 493
                          G  RS +R R+RS
Sbjct: 1145 GSRSRSRSGSQASRGSRRSRSRSRSRS 1171



 Score = 23.0 bits (47), Expect = 9.8
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
 Frame = -3

Query: 684  SGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSARTH-AGPR-RTHSAH 511
            S  R R   R+ +     +      R G      R R   R  SA +  +G R R+ S  
Sbjct: 1095 SRSRSRSRSRSRSRSGSAKGSRSRSRSGSGGSRSRSRSRSRSQSAGSRKSGSRSRSRSGS 1154

Query: 510  HRAPPADRVRSRAPDLAGPSCMVRPEAGARVA 415
              +  + R RSR+   +G     R  +G+R A
Sbjct: 1155 QASRGSRRSRSRSRSRSGSRSRSRSGSGSRQA 1186


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,696
Number of Sequences: 2352
Number of extensions: 14707
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75676146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)