Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5d05
(772 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 413 e-116
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 30 1.8
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_11242| Best HMM Match : MAM (HMM E-Value=0) 29 5.5
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5) 28 7.3
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 413 bits (1018), Expect = e-116
Identities = 183/243 (75%), Positives = 213/243 (87%)
Frame = +1
Query: 28 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 207
MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484
Query: 208 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 387
V KIVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAK
Sbjct: 485 VKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAK 544
Query: 388 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 567
YKL +V+RV G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+
Sbjct: 545 YKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNM 604
Query: 568 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 747
M+ GGRN+GRVG + RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+
Sbjct: 605 AMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPK 664
Query: 748 GKG 756
GKG
Sbjct: 665 GKG 667
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +1
Query: 358 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 537
I +TP+ K C+V R++TGP +++ +G + +++ ++ + + +
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345
Query: 538 DFIKFESGNLCM 573
F FE G CM
Sbjct: 346 -FPDFEKGVACM 356
>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +3
Query: 468 PLSRPTYQSQRFHPVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPR---ETSRL 638
PLS + S R+HP+ C++ + LH L + H + H P ++S L
Sbjct: 102 PLSSSSQSSHRYHPL--CHHHHHHLHH--HHHLCHHHLSLFVCLPTQHYFPAFQVQSSPL 157
Query: 639 LRHCAHQGLHG 671
L HC H G
Sbjct: 158 LCHCTHDDFSG 168
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/56 (19%), Positives = 28/56 (50%)
Frame = +1
Query: 184 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 351
+Y L ++ + + L++ G + P+YP+ ++ ++ +N+LF + R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651
>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
Length = 348
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +3
Query: 171 EES--SEVCFDRKRSPENCE 224
EES +E+C DRKR P++CE
Sbjct: 76 EESRYNELCHDRKRGPDDCE 95
>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
Length = 203
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 170 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPRAMLDK 18
RK +R N++G ++GLG+ PP + I F K K F PR K
Sbjct: 60 RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPRRSKQK 111
>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = -3
Query: 248 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 132
PS++ F +FRT FP + RF R+ IT ++LW
Sbjct: 84 PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 376 EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 546
E+A +C++ R+ P+ LV G +++ I + Q+ + + +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030
Query: 547 KFESGNLCMITGGRNLGRV 603
K + NLC G +N+G V
Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,521,569
Number of Sequences: 59808
Number of extensions: 645415
Number of successful extensions: 1827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1820
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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