Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d05
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   347   5e-96
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    32   0.52 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.7  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.7  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   6.4  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  347 bits (853), Expect = 5e-96
 Identities = 161/241 (66%), Positives = 190/241 (78%)
 Frame = +1

Query: 34  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 213
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 214 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 393
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 394 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 573
           LCKVK V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 574 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGK 753
           +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G 
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGA 241

Query: 754 G 756
           G
Sbjct: 242 G 242


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
 Frame = +3

Query: 462 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPRETSRL 638
           HH  +   +  +  H P  H ++ ++G H     E  + H     G  G H         
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554

Query: 639 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 734
               AH G HG H         H   G  GVH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH 586



 Score = 31.5 bits (68), Expect = 0.69
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +3

Query: 597 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 734
           A  HH    E      H  H G HGTH  H          GH G H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH 509



 Score = 31.1 bits (67), Expect = 0.91
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = +3

Query: 576 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAA 743
           HG    G+ G H     T   L H  H G HGTH    H      H+   HE G H  A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGA 701



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +3

Query: 645 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVH 734
           H AH   HG H RH  E    H+   H G H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH 422



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +3

Query: 606 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 734
           HHR   E        AH G HGTH  H  E   H+   H G H
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHH 442



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
 Frame = +3

Query: 462 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*V-RELVYDHGRP*LGACGHH--RVPRET 629
           HH  +   +  +  H P  H ++  +G H V       + HG       GHH        
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614

Query: 630 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQG--HEGVH 734
                + AH G HG H  H      H   G  H G H
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH 651



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +3

Query: 603 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 734
           G H  P        H  H   HG H  H  ++  H+  GH   H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +3

Query: 606 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 734
           HH  P           H G HG H  H          GH G H
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGH 673


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 346 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 477
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 564 LVYDHGRP*LGACGHHRVPRETSRLLRH 647
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 564 LVYDHGRP*LGACGHHRVPRETSRLLRH 647
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 503  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 339
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,625,155
Number of Sequences: 27780
Number of extensions: 457091
Number of successful extensions: 1356
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)