Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d03
         (540 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q07WN8 Cluster: TPR repeat-containing protein; n=1; She...    36   0.45 
UniRef50_Q182E0 Cluster: Putative uncharacterized protein; n=2; ...    36   0.60 
UniRef50_Q4UA59 Cluster: SfiI-subtelomeric related protein famil...    34   2.4  
UniRef50_Q8IKL0 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  
UniRef50_Q61U23 Cluster: Putative uncharacterized protein CBG055...    33   4.2  
UniRef50_A2DHM0 Cluster: Putative uncharacterized protein; n=1; ...    32   9.7  

>UniRef50_Q07WN8 Cluster: TPR repeat-containing protein; n=1;
           Shewanella frigidimarina NCIMB 400|Rep: TPR
           repeat-containing protein - Shewanella frigidimarina
           (strain NCIMB 400)
          Length = 425

 Score = 36.3 bits (80), Expect = 0.45
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
 Frame = -1

Query: 447 LKMFPKSLRFYSSITEVVAFL------FIVR*SVCFRSSWPRGDFVAPPDLSQNSNFEHN 286
           + MFP+   FY  ++++   +       I    +   SSW R  ++A  DL+QNS    N
Sbjct: 299 ISMFPQQWEFYVILSQIQTAIKAYDEALITVAMIPDSSSWARDKWIAQTDLAQNSK---N 355

Query: 285 FAIAAKMYKTVLCFE 241
           FA+A + Y+ +L  E
Sbjct: 356 FALAEEAYRNLLVSE 370


>UniRef50_Q182E0 Cluster: Putative uncharacterized protein; n=2;
           Clostridium difficile|Rep: Putative uncharacterized
           protein - Clostridium difficile (strain 630)
          Length = 491

 Score = 35.9 bits (79), Expect = 0.60
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -1

Query: 252 LCFEKFFTTFFSRLYGNTNFGQIL---RELRQS*LLQYKLFCSYRLYTPKSFYSSCINRK 82
           +CFE  F      LY N     +     +LR+   L +K+    ++Y+ KSFY   ++ K
Sbjct: 226 ICFECEFFNLMCLLYINLKRPMVFAYTNDLRELAFLNHKIMLKRKMYSDKSFYKKLLHEK 285

Query: 81  ISII 70
           IS I
Sbjct: 286 ISSI 289


>UniRef50_Q4UA59 Cluster: SfiI-subtelomeric related protein family
           member, putative; n=1; Theileria annulata|Rep:
           SfiI-subtelomeric related protein family member,
           putative - Theileria annulata
          Length = 529

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 75  LKFYDLYN*NKNFLEYKVDNYKKVCIVEVNFDAVRAEFDQNLCFRI 212
           L F D  N + N+L+  V+ Y+ + ++E  F+  +  FD  LC+ +
Sbjct: 47  LLFTDSNNKDYNYLQCSVELYELILVIEFGFNCKKVWFDSKLCWTL 92


>UniRef50_Q8IKL0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 3322

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 96  N*NKNFLEYKVDNYKKVCIVEVNFDAVRAEFDQNLCFRIDAKKRL*KTFRNKGLFCTFS 272
           N N N      +NY+K    ++N +  +++ +QN   R++  K   K F NK +F   S
Sbjct: 427 NNNNNNKNNSNNNYEKYYNYKLNNNLFKSDVNQNYSSRLNINKNFPKNFNNKKIFTNMS 485


>UniRef50_Q61U23 Cluster: Putative uncharacterized protein CBG05502;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG05502 - Caenorhabditis
           briggsae
          Length = 355

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 369 SVCFRSSWPRGDFVAPPDLSQNSNFE--HNFAIAAKMYKTVLCFEKFFTTFFSRLYGNTN 196
           S+C  S+ P+GD+    +L  N NF    +F  A    K    F  +        Y NTN
Sbjct: 106 SICHDSNLPQGDYKIRLNLLSNINFNFLSDFVAATNELKNPKRFTYYLKP--KSFYNNTN 163

Query: 195 FGQILR 178
           F +IL+
Sbjct: 164 FSRILK 169


>UniRef50_A2DHM0 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1310

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = -2

Query: 455 EDF*RCFQNPCDFIVQLLRSLLFCLSFGDQFVSEVVGQEAILLPLQI*AKTVILNTISLS 276
           EDF   + NP       L  +  CL+   + +  + G   I LP     + +  NT+ L+
Sbjct: 223 EDFDNYYLNPSGVSTDKLHEI--CLNINHKNIFSIFGFSEISLP-----QVIAGNTLELT 275

Query: 275 QRKCTKQSFVSKSFLQPFFRVYTETQ 198
             K  K S VS SFL+ +FR   E +
Sbjct: 276 --KFIKTSTVSVSFLENYFRYPLENE 299


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,611,340
Number of Sequences: 1657284
Number of extensions: 9169925
Number of successful extensions: 24537
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24534
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)