Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d03
         (540 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           25   0.56 
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   4.0  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   5.2  

>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 360 FRSSWPRGDFVAPPDLSQNSNFEHNFAIAAKMYKTV 253
           F  ++    F+A  D  +N N EHN+    +MY +V
Sbjct: 15  FYQNYKTNPFLAS-DCDKNQNTEHNYTHNNEMYHSV 49


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 238 LFETKDCFVHFRCDSE 285
           LF   D F  F CD+E
Sbjct: 75  LFSRSDFFQQFECDNE 90


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -1

Query: 246 FEKFFTTFFSRLYG----NTNFGQILRELRQS*LLQYKLFCSYRLYTPKSFYSSCINRKI 79
           F  F+  F  + Y     N    + L E  ++ L    + CS     PK  +    NR+ 
Sbjct: 32  FPNFYNDFEVQRYTWKCENQKCVKYLVEDEETSLATCNMLCSEPAIWPKPVHIKLTNRES 91

Query: 78  SIINRS 61
           SII+++
Sbjct: 92  SIIDKT 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,267
Number of Sequences: 336
Number of extensions: 2668
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)