Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d03
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   2.3  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   5.4  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   7.2  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    25   7.2  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.2  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   9.5  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   9.5  

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 200 VFPYRREKKV-VKNFSKQRTVLYIFAAIAKLCSKLLFWLKSGGATKSPLGQLLR 358
           +F Y  E+   +K  + +  +   FA I +LCS++L   +     K+ LG LLR
Sbjct: 166 IFDYSAEQMTQLKTKNLKNQMCGEFAEIFQLCSQILERAQKPSLIKATLGTLLR 219


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 325 GNK-IASWPTTSETN*SPNDKQKSNDLSN*TIKSQ 426
           GNK +  +P+T+E +   ND+ K+N LS  +   Q
Sbjct: 484 GNKHLELYPSTAEVSNVRNDESKANSLSEISYNQQ 518


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 306 FGLNLEGQQNRLLANYFGNKL 368
           FG+ +   QN LL NY G ++
Sbjct: 522 FGIKVSNDQNYLLVNYLGPEI 542


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -1

Query: 234 FTTFFSRLYGNT 199
           FTTF SR+YGN+
Sbjct: 25  FTTFVSRIYGNS 36


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 126 LYTPKSFYSSCINRKISIINRSVNVRAK 43
           L  P+S+++ CI + +S I+  +N   K
Sbjct: 677 LNLPRSYFADCITKSVSNIDSLLNTPVK 704


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 215 VYTETQILVKFCANCVKVNFYNTNFFV 135
           VYT   +L+ +C NC  +   + NF V
Sbjct: 417 VYTGVPLLLHWCINCRSIFSGDRNFIV 443


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 147 KLFCSYRLYTPKSFYSSCINRKISIINRS 61
           K F SYR  T  +  +SC +  +S++  S
Sbjct: 31  KTFLSYRTLTALAIETSCDDTSVSVVRTS 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,727
Number of Sequences: 5004
Number of extensions: 44084
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)