Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d03
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0218 + 1856104-1856700,1856814-1857452                           28   4.1  
01_06_0012 + 25575196-25575198,25575769-25575945,25576034-255760...    27   7.2  
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100...    27   7.2  
06_03_0445 - 20866417-20866442,20868280-20868478,20868576-208687...    27   9.6  

>01_01_0218 + 1856104-1856700,1856814-1857452
          Length = 411

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 28/96 (29%), Positives = 40/96 (41%)
 Frame = -1

Query: 441 MFPKSLRFYSSITEVVAFLFIVR*SVCFRSSWPRGDFVAPPDLSQNSNFEHNFAIAAKMY 262
           M PK  R   S    VAFLF+VR  +  R  W +  F A  + S  S + H++   A   
Sbjct: 128 MAPKVSRTPYSRVPKVAFLFLVRNQLPLRPLWEK--FFAGHNQSLYSIYVHSYPPFAASL 185

Query: 261 KTVLCFEKFFTTFFSRLYGNTNFGQILRELRQS*LL 154
            T   F           +G++N  +  R L  + LL
Sbjct: 186 PTDSVFYGRMIPSQKTTWGDSNLVEAERRLLANALL 221


>01_06_0012 +
           25575196-25575198,25575769-25575945,25576034-25576078,
           25576164-25576371,25576685-25576875,25577078-25577473
          Length = 339

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 453 RLLKMFPKSLRFYSSITEVVAFLFIVR*SVC 361
           R+ ++ P +LRFY S   VVA + IV  S C
Sbjct: 68  RMPQVKPTALRFYGSFNVVVAGITIVNSSQC 98


>01_06_0004 +
           25507739-25508206,25509346-25509477,25509910-25510086,
           25510175-25510219,25510305-25510512,25510766-25510825,
           25510826-25511016,25511219-25511614
          Length = 558

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 453 RLLKMFPKSLRFYSSITEVVAFLFIVR*SVC 361
           R+ ++ P +LRFY S   VVA + IV  S C
Sbjct: 267 RMPQVKPTALRFYGSFNVVVAGITIVNSSQC 297


>06_03_0445 -
           20866417-20866442,20868280-20868478,20868576-20868731,
           20869207-20870097
          Length = 423

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = +2

Query: 200 VFPYRREKKVVKNFSKQRTVLYIFAAIAKLCSKLLFWLKSGGATKSPLGQLLRKQTDHRT 379
           VF +RR+ +    F+K +T+L     +A   S L+++L+     +    QL + Q   RT
Sbjct: 297 VFIFRRDFRCCPTFNKLKTLLLNEWCMAADSSALIYFLQHSPVLEKLTLQLRKSQ---RT 353

Query: 380 INKKATTS 403
           + K+ +T+
Sbjct: 354 MVKRGSTN 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,691,811
Number of Sequences: 37544
Number of extensions: 225763
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)