Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5d03
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)                  31   0.60 
SB_48521| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_53633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_18332| Best HMM Match : WAP (HMM E-Value=9.5)                       28   5.6  
SB_2985| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               27   7.4  
SB_17182| Best HMM Match : Phospholip_A2_1 (HMM E-Value=5.8e-13)       27   7.4  
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)        27   9.8  
SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.8  

>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
          Length = 925

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 360 FRSSWPRGDFVAPPDLSQNSNFEHNFAIAAKMYKTVLCFEKFFTTFFSRLYGNTNFG 190
           F  +W   D  A P+L+   +F +  A +A    +V     F T+ FS L G + FG
Sbjct: 336 FLDTWRGSDQRAFPNLAAKLSFVYRRAASAMFITSVTTMVAFTTSVFSPLLGVSTFG 392


>SB_48521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 234 KTFRNKGLFCTFSLR*RNCVQNYCFGLNLEGQQNRLLANYFGNKL 368
           KTF N   +C +     N ++ + F  +L+G    LLAN  G  +
Sbjct: 49  KTFTNSAYYCDWG----NALKRFQFNFHLDGSLTALLANPVGEAI 89


>SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1004

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 280 YRSENVQNSPLFRKVFYNLFFASIRKHKFWSNSARTASKLTSTIQTFL 137
           Y  E+ QN PL RK+  N+F    ++ K++ +   T   L  T+   L
Sbjct: 151 YGGESNQNMPLLRKMIVNIF---SKQPKYYGDLDATIPTLVETLNNIL 195


>SB_53633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 17  VIRNVRVVRFARTLTLRFIIEILRFIQL 100
           V+R VRVVRF R + L  ++ ++R ++L
Sbjct: 295 VVRLVRVVRFMRVVRLVRVVRLVRVVRL 322



 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 17  VIRNVRVVRFARTLTLRFIIEILRFIQL 100
           V+R VRVVRF R + L  ++ ++R ++L
Sbjct: 319 VVRLVRVVRFMRVVRLVRVVRLVRVVRL 346



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 17  VIRNVRVVRFARTLTLRFIIEILRFIQLE 103
           V+R VRVVRF R + L  ++  +R ++L+
Sbjct: 498 VVRLVRVVRFMRVVRLVPVVRFMRVVRLK 526



 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 17  VIRNVRVVRFARTLTLRFIIEILRFIQL 100
           V+R VRV RF R + L  ++ ++R ++L
Sbjct: 235 VVRLVRVARFMRVVRLMRVVRLVRVVRL 262



 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 17  VIRNVRVVRFARTLTLRFIIEILRFIQ 97
           V+R VRVVRF R + L  ++ ++ F++
Sbjct: 96  VVRLVRVVRFMRVVRLVRVVRLVSFVR 122



 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 17  VIRNVRVVRFARTLTLRFIIEILRFIQ 97
           V+R VRVVRF R + L  ++ ++R ++
Sbjct: 144 VVRLVRVVRFMRVVRLVRVVRLMRVVR 170



 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 17  VIRNVRVVRFARTLTLRFIIEILRFIQL 100
           V+R +RVVRF R + L  ++  +R ++L
Sbjct: 162 VVRLMRVVRFVRVVRLVRVVRFMRVVRL 189


>SB_18332| Best HMM Match : WAP (HMM E-Value=9.5)
          Length = 270

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 388 FVYRSVISLFPK*LAKRRFCC 326
           FVYRSV++ + +   KRRF C
Sbjct: 8   FVYRSVLTCYNRSFLKRRFLC 28


>SB_2985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 325 GNKIASWPTTSETN*SPNDKQKSNDLS 405
           GN++A W T + TN S N+   SN+ S
Sbjct: 5   GNEVAFWGTQNSTNNSNNNDNSSNNNS 31


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +3

Query: 96   N*NKNFLEYKVDNYKKVCIVEVNFDAVRAEFDQNLCFRIDAKKRL*KTFRNKGLF 260
            N  +N  + +VD Y++ C  +        + + N+C  +D +KR  K   N+  +
Sbjct: 1398 NTKENNEDRRVDEYRRKCKSKPGTTKENLDVNANICKNLDKRKRSYKEAMNESAY 1452


>SB_17182| Best HMM Match : Phospholip_A2_1 (HMM E-Value=5.8e-13)
          Length = 182

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 287 LCSKLLFWLKSGGATKSP 340
           LC ++ FWLK+G  TK+P
Sbjct: 123 LCFRVRFWLKAGIRTKAP 140


>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
          Length = 1423

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 353  LRKQTDHRTINKKATTSVIEL*NRKDFGNIFKSLRELFIS*PKIHSE 493
            LR+Q   R + KK   S + + N     ++FK+L EL  +  K+++E
Sbjct: 1108 LRRQILGRAVCKKVPVSAVGIFNYDGAQDLFKNLMELTENGRKVYAE 1154


>SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 250 LFRKVFYNLFFASIRKHKFWSNSARTASKLTSTIQTFL 137
           +F ++ Y LF+A + KH F   +      + ST+   L
Sbjct: 301 VFERIVYELFYAFLEKHDFLCKNQSGFRSIHSTMTALL 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,588,000
Number of Sequences: 59808
Number of extensions: 304284
Number of successful extensions: 676
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)