Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5c24
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 74 2e-14
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 74 2e-14
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 56 4e-09
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 46 7e-06
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 39 8e-04
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 38 0.001
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 37 0.002
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 28 1.1
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 27 1.9
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 27 1.9
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 2.5
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 27 2.5
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 26 4.4
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 26 4.4
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 26 5.8
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 7.7
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 74.1 bits (174), Expect = 2e-14
Identities = 29/74 (39%), Positives = 50/74 (67%)
Frame = +2
Query: 281 RPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHK 460
RP NAF+++ + L PS++N+++SK +G MW+N S+E ++ + K ++ + QH+
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSEFYKAQHQ 164
Query: 461 KQHPDYKYQPRRRK 502
K +P YKYQPR+ K
Sbjct: 165 KMYPGYKYQPRKNK 178
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 74.1 bits (174), Expect = 2e-14
Identities = 29/74 (39%), Positives = 50/74 (67%)
Frame = +2
Query: 281 RPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHK 460
RP NAF+++ + L PS++N+++SK +G MW+N S+E ++ + K ++ + QH+
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSEFYKAQHQ 164
Query: 461 KQHPDYKYQPRRRK 502
K +P YKYQPR+ K
Sbjct: 165 KMYPGYKYQPRKNK 178
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 56.4 bits (130), Expect = 4e-09
Identities = 26/79 (32%), Positives = 49/79 (62%)
Frame = +2
Query: 263 RRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADK 442
++ VKRP+N+FM++ RR AE P+ ++ +S+ +G +W+N S + K + +
Sbjct: 12 QKSSVKRPLNSFMLY----RRDRQAEIPTSNHQSISRIIGQLWRNESAQVKKYYSDLSAL 67
Query: 443 LRTQHKKQHPDYKYQPRRR 499
R +H ++P+YKY P++R
Sbjct: 68 ERQKHMLENPEYKYTPKKR 86
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 45.6 bits (103), Expect = 7e-06
Identities = 19/67 (28%), Positives = 38/67 (56%)
Frame = +2
Query: 278 KRPMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQH 457
KR M+AFM F+ R ++ + P +L LG WK L+ E+ P+ ++A + + ++
Sbjct: 17 KRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQDKERY 76
Query: 458 KKQHPDY 478
+++ +Y
Sbjct: 77 ERERKEY 83
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 38.7 bits (86), Expect = 8e-04
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Frame = +2
Query: 278 KRPMNAFMVFAQAMRRRLSAERPSLHN--AELSKSLGSMWKNLSEEEKLPFIKEADKLRT 451
KRP +A+ +F + R + N E++K++ W +LSE+++ + +EA KLR
Sbjct: 118 KRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASKLRE 177
Query: 452 QHKKQHPDYKYQPRRRKPPLASASTPRVKRESSPDRNHIDFS 577
++++ Y AS + RV E + + D S
Sbjct: 178 AYEEEMAAYNASKEN-----ASVADSRVTAEETSTKPSEDLS 214
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 37.9 bits (84), Expect = 0.001
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Frame = +2
Query: 296 FMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLSEEEKLPF----IKEADKLRTQHKK 463
F F+ + +L AE +L L K+L W NL+EEEK P+ + +K R ++
Sbjct: 202 FNHFSSIQKPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAREARRR 261
Query: 464 QHPDYKYQPRRRKPPLASASTPRVKRESSPDRNHID 571
+ + + K + ++++ D+N ID
Sbjct: 262 RSAQNSAKLEKEKAKEKQKDKDQ-EQDTVSDKNQID 296
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 37.1 bits (82), Expect = 0.002
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Frame = +2
Query: 260 MRRPHV-KRPMNAFMVFAQAMRR--RLSAER--PSLHNA--ELSKSLGSMWKNLSEEEKL 418
+R P V K+P +AF++F + +R +L E P + E +++ WK L+E++K
Sbjct: 141 LRHPDVPKKPSSAFILFYKELRNNPKLRQELGIPEAISTLVEETQNASKAWKELAEDKKK 200
Query: 419 PFIKEADKLRTQHKK 463
PFI ++ L+ Q+ K
Sbjct: 201 PFIDKSKALKEQYDK 215
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Frame = +2
Query: 284 PMNAFMVFAQAMRRRLSAERPSLHNAELSKSLGSMWKNLS---EEEKLPFIKEADKLRTQ 454
P N +Q R+ S++ L SKS + K L +E L + D L+
Sbjct: 596 PANDLQNKSQNNERKASSQVKELEVKNYSKSTDLLKKTLRIPRNDEPLEAANQFDLLKVS 655
Query: 455 HKKQHPDYKYQPRRRKPPLASASTPRVKRESSPDRNHIDFS 577
+++ + P+R + + + K S ++NH+D S
Sbjct: 656 PQQKS---EVPPKRNELSQSKLKNRKKKENSETNKNHVDMS 693
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 401 SEEEKLPFIKEADKLRTQHKKQHPDYKYQPRRRKPPLASASTPRVKRESSP 553
S+ E + KEA ++ + + ++ PR+ PP S + P + S P
Sbjct: 909 SQTESILVEKEATRVANEALRAVSSFRRPPRQLIPPQQSTNVPGTSKPSGP 959
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 473 DYKYQPRRRKPPLASASTPRVKRESSPDRNHIDFS---GMPEISAALLMDGPP-DGTELD 640
D + Q RR+P ++ +TPR +++ ++ +F G P L D P D +++D
Sbjct: 38 DVQVQLTRRRPGQSNLTTPRNEKDKVQIQSGTEFGVTLGTPIGMLVLNQDQKPHDYSDMD 97
Query: 641 QYLEPRP 661
Y PRP
Sbjct: 98 NY--PRP 102
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +2
Query: 356 NAELSKSLGSMWKNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQ-----PRRRKPPLASA 520
N+ + SL +WK + F++ +++L + KKQ P + Q P K P ASA
Sbjct: 340 NSCIPSSLKILWKEVDYHCISSFLQSSNELASSLKKQLPSFLAQTPLTLPSNTKTPPASA 399
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 337 GRQTAAHRLREHHECI 290
GR AAHRL E H+C+
Sbjct: 171 GRFCAAHRLMEDHDCV 186
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 644 TGLIRYRPVGRPLVKQRIFPACPRNLC 564
T +RY + RP+++QR AC LC
Sbjct: 14 TKAVRYHTLLRPILQQRFLRACFALLC 40
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 383 SMWKNLSEEEKLPFIKEADKLRTQHKKQ 466
S WKNL P EAD+L + +KQ
Sbjct: 2 SFWKNLFTSAFTPISAEADELIKEDRKQ 29
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 221 DTILPQPTKGGGCMRRPHVKRPMNAFMVFAQAMRRRLSAERPSLHNAE 364
+ I+P T G G + K +F+ F ++ + R E +HN+E
Sbjct: 19 EIIVPSTTNGNGTIESYKEKSVGTSFLDFFRSYKLRPDNEFAEVHNSE 66
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 290 NAFMVFAQAMRRRLSAERPSLHNAELSKSLGSM-WKNLSEEEKLPFIKEADKLRTQHKKQ 466
N++ F A+ RRL + PS+ ++ + LG K K+ K+ D +
Sbjct: 522 NSYSCFKSALLRRLIQQLPSI-SSIIDHFLGMFDQKEAENNNKVDMFKDIDNFDLSEEPN 580
Query: 467 HPDYK 481
DY+
Sbjct: 581 DVDYE 585
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,347
Number of Sequences: 5004
Number of extensions: 71324
Number of successful extensions: 242
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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