Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5c24
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.6  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   6.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 411 RSCLSLKKQISYERNIKNSTRITNTNLDVES---HR*LQLQPRESNGNHLL 554
           R C+ LK     + N+KN   I  TNL VE       L+ +P+E  G  +L
Sbjct: 55  RVCIKLKLSQLIDVNLKNQ--IMTTNLWVEQSWYDYKLRWEPKEYGGVKML 103


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 411 RSCLSLKKQISYERNIKNSTRITNTNLDVES---HR*LQLQPRESNGNHLL 554
           R C+ LK     + N+KN   I  TNL VE       L+ +P+E  G  +L
Sbjct: 55  RVCIKLKLSQLIDVNLKNQ--IMTTNLWVEQSWYDYKLRWEPKEYGGVKML 103


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 49  SKFRCRQLDNKYIHFFFQIIY 111
           SK +  +L  +YI F FQ+++
Sbjct: 289 SKIQTLKLATRYIDFLFQVLH 309


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 392 KNLSEEEKLPFIKEADKLRTQHKKQHPDYKYQPRRRKPPLA 514
           KN S EEK P    + +   + K++  + +Y   RR+  L+
Sbjct: 14  KNGSPEEKRPRTAFSAEQLARLKREFAENRYLTERRRQQLS 54


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 623 DGTELDQYLEPRPVPNYHE 679
           D  + D++L P P  +YH+
Sbjct: 312 DHVDFDEFLPPPPNLDYHD 330


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 189  ASFISSLSPDLSRSWPQLMVTSNDRTVYYLKK--KMNIFIIELPAPKFRWNVNSA 31
            AS I +L+P +    P  + + +D+     K+  K+    + +PAP+  W V  A
Sbjct: 1263 ASKIVALAPSVRV--PAKIASFDDKFTATYKEDVKLPCLAVGVPAPEVTWKVRGA 1315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,452
Number of Sequences: 438
Number of extensions: 5343
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)