Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5c19
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)                29   4.0  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             29   4.0  
SB_17183| Best HMM Match : DUF348 (HMM E-Value=5.3)                    29   5.3  
SB_38820| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07)         28   9.2  
SB_27969| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)                 28   9.2  
SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)                 28   9.2  
SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_51663| Best HMM Match : Phage_min_tail (HMM E-Value=4.1)            28   9.2  
SB_32853| Best HMM Match : RVT_1 (HMM E-Value=1.6)                     28   9.2  
SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)                28   9.2  
SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
          Length = 794

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +2

Query: 338 TNVNIAYVFLFFICIVLLNVLVV---FSDTNRTTDTKRKNVATKI 463
           TNV++ Y F  F CI + N+ +      D + T  T  KN  T I
Sbjct: 422 TNVHVLYAFASFWCIAMCNMYITGYSMIDYHDTMSTHLKNKETPI 466


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 507 VVCARSKLFDKRPTRRPRCWRK 572
           +V  R+ L+D RPT R RCW K
Sbjct: 599 LVDGRAHLYDARPTLRWRCWFK 620


>SB_17183| Best HMM Match : DUF348 (HMM E-Value=5.3)
          Length = 334

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 81 RIDSHILTTTAIWRPKDFFLE 19
          RI   +LT   +WRPKD F+E
Sbjct: 6  RICERLLTNDDVWRPKDSFVE 26


>SB_38820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 489 TFSSKSVVCARSKLFDKRPTRRP 557
           TF  K  VC+RS LFD  P+  P
Sbjct: 34  TFFEKEEVCSRSNLFDSYPSPLP 56


>SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07)
          Length = 550

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 260 KTKTLTMYNERIRAALNRPARFNDQTTN 343
           K K L  + E   + LNRP+  ND+  N
Sbjct: 455 KDKVLARWAEHFESVLNRPSAINDEAIN 482


>SB_27969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 260 KTKTLTMYNERIRAALNRPARFNDQTTN 343
           K K L  + E   + LNRP+  ND+  N
Sbjct: 117 KDKVLARWAEHFESVLNRPSAINDEAIN 144


>SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)
          Length = 855

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 260 KTKTLTMYNERIRAALNRPARFNDQTTN 343
           K K L  + E   + LNRP+  ND+  N
Sbjct: 216 KDKVLARWAEHFESVLNRPSAINDEAIN 243


>SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)
          Length = 1092

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 260 KTKTLTMYNERIRAALNRPARFNDQTTN 343
           K K L  + E   + LNRP+  ND+  N
Sbjct: 473 KDKVLARWAEHFESVLNRPSAINDEAIN 500


>SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1395

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 260 KTKTLTMYNERIRAALNRPARFNDQTTN 343
           K K L  + E   + LNRP+  ND+  N
Sbjct: 513 KDKVLARWAEHFESVLNRPSAINDEAIN 540


>SB_51663| Best HMM Match : Phage_min_tail (HMM E-Value=4.1)
          Length = 143

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 239 TPIVYNLKTKTLTMYNERIRAALNRPARFNDQTTNVNIAYVFLFFICIVLLNVLVVF 409
           T + Y L +  LT+ +  I   LN+  R   +TT++ I+  F F    + + ++  F
Sbjct: 22  TFVQYLLPSIGLTVVSVGITRFLNKKTRMTPETTSIQISKAFQFKTSRMFIAIIAAF 78


>SB_32853| Best HMM Match : RVT_1 (HMM E-Value=1.6)
          Length = 358

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 260 KTKTLTMYNERIRAALNRPARFNDQTTN 343
           K K L  + E   + LNRP+  ND+  N
Sbjct: 56  KDKVLARWAEHFESVLNRPSAINDEAIN 83


>SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
          Length = 1443

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 260  KTKTLTMYNERIRAALNRPARFNDQTTN 343
            K K L  + E   + LNRP+  ND+  N
Sbjct: 948  KDKVLARWAEHFESVLNRPSAINDEAIN 975


>SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 260 KTKTLTMYNERIRAALNRPARFNDQTTN 343
           K K L  + E   + LNRP+  ND+  N
Sbjct: 244 KDKVLARWAEHFESVLNRPSAINDEVIN 271


>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1766

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 260 KTKTLTMYNERIRAALNRPARFNDQTTN 343
           K K L  + E   + LNRP+  ND+  N
Sbjct: 378 KDKVLARWAEHFESVLNRPSAINDEAIN 405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,164,425
Number of Sequences: 59808
Number of extensions: 525546
Number of successful extensions: 1519
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)