Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5c19
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36238-6|CAA85279.2|  337|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z93382-7|CAB07618.1|  214|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF024494-10|AAB70336.1|  642|Caenorhabditis elegans Hypothetical...    30   2.0  
AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    28   6.1  
AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z36238-6|CAA85279.2|  337|Caenorhabditis elegans Hypothetical
           protein R74.7 protein.
          Length = 337

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 552 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFA 656
           R R   KL++ID +F + + V   +DLC  PG ++
Sbjct: 22  RARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWS 56


>Z93382-7|CAB07618.1|  214|Caenorhabditis elegans Hypothetical
           protein F45G2.9 protein.
          Length = 214

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 552 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTN 713
           R R   KL+EI++KF   +   T +D+   PG +    +   P   A GV L N
Sbjct: 33  RARSAFKLIEINEKFKFLKPESTVIDIGCAPGSWLQVVVQKCPNGYASGVDLQN 86


>Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical
           protein C54E10.1 protein.
          Length = 872

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 519 RSKLFDKRPTRRPRCWRKLLEIDK--KFHVCRHV 614
           R K+F KRP R   C  KLLE+ K  K H+ R +
Sbjct: 477 RFKIFIKRPERGDVCASKLLEVMKMEKLHILRSI 510


>AF024494-10|AAB70336.1|  642|Caenorhabditis elegans Hypothetical
           protein C38C3.7 protein.
          Length = 642

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
 Frame = +2

Query: 140 WRELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKT-LTMYNERI--RAALN 310
           W  +I+++ N+ P      T+F++  FE+ +     +++++  T  T+ N +I  R AL+
Sbjct: 311 WISIIVSIDNSEPPSPQKFTVFKRMGFEDCETVEDFIWHVENSTKKTVKNAKIERRLALH 370

Query: 311 RPAR-FND---QTTNVNIAYV 361
           + +R F D   +   VN+ Y+
Sbjct: 371 KVSRKFKDAVSRKAKVNLEYL 391


>AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical
           protein ZK250.2 protein.
          Length = 209

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 165 PTTHRLTTRLEQCFKKPILKISTTIHRLC 251
           PTTH  T   E+    P++++ST   ++C
Sbjct: 54  PTTHAETGMTEEMMTTPVVEVSTVTEKVC 82


>Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical
           protein F15D4.5 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
 Frame = +3

Query: 549 RRPRCW---RKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPLCKAYGVTLTNN- 716
           RR   W   R+ L   KK H C  V   ++ CG      N  M  N  CK Y  TL  N 
Sbjct: 387 RRVSTWFDRREKLTEQKKCHQCLEVYETVEFCGTRDNHTNCPME-NTFCK-YCKTLKGNQ 444

Query: 717 ----SVCVYKPTVC 746
                   + P VC
Sbjct: 445 PGWKEAAAHHPAVC 458


>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 281 YNERIRAALNRPARFNDQTTNVNIAYVFLFFICIVLLNVLVVFSDTNRTTDTK 439
           YN  +  A++ P         +NI Y+F FF+ I+ L +L V    N+  +++
Sbjct: 169 YNSPVITAISPPKGVE---IRLNILYIFCFFLAILALILLQVVRFVNKRRESR 218


>AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK355.4 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 639 GPGEFANYTMSLNPLCKAYGVTLTNNSV 722
           G   F N +M +   C+ YG+++TNNS+
Sbjct: 108 GSLSFFNISMHMYFYCETYGLSITNNSL 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,881,181
Number of Sequences: 27780
Number of extensions: 382666
Number of successful extensions: 1092
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)